View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7457_high_5 (Length: 508)
Name: NF7457_high_5
Description: NF7457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7457_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 496
Target Start/End: Original strand, 24716357 - 24716836
Alignment:
| Q |
18 |
atatcaaggctctgaacttggggcagagagtagcctaaaatagacagggcgagattattgattttgacggctctcttctttgaatctcgatcnnnnnnn- |
116 |
Q |
| |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
24716357 |
atatcaaggctctgaacttggggcaaagagttgcctaaaatagacagggcgagattattgattttgaccgctctcttctttgaatctcgctcaaaaaaaa |
24716456 |
T |
|
| Q |
117 |
ttgggggaaagtattttagaaagctcgtggacgatgaaaattggtatttgattctcaaacaaggcaagatcagacaagacatcatcgttttttagcactt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24716457 |
ttgggggaaagtattttagaaagctcgtggacgatgaaaattggtattcgattctcaaacaaggcaagatcagacaagacatcatcgttttttagcactt |
24716556 |
T |
|
| Q |
217 |
gaggtgcgaaaagacaaggagtaaagttcaattgacttgatagttgagaatcaagttcgagttctttcgtgatgagaagctctagcagaaaacaaccatc |
316 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24716557 |
gaggtgcgaaaagacaaggagtaaagttcaattgacttgatagttgagaatcaagttcgagttcttttgtgatgagaagctctagcagaaaacaaccatc |
24716656 |
T |
|
| Q |
317 |
cactagcataattttcacgagttcgtatacttcaaggctgatgtcctccacgtaacttgctcgaatctgatcatttatatcccaaatgactttgctgcat |
416 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24716657 |
cactagcataattttcacgagttcgtatacttcaaggctgatgtcctccacgtaacttgctcgaatctgatcatttaaatcccaaatgactttgctgcat |
24716756 |
T |
|
| Q |
417 |
ttctctaagatatctccaggttttccgtcatttttctctactcgatcaatgagagccagcatacagcgtaatttcatctc |
496 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24716757 |
ttctctaagatatctccaggttttacgtcatttttctctactcgatcaatgagagccagcatacagcgtaattttatctc |
24716836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 24807644 - 24807846
Alignment:
| Q |
21 |
tcaaggctctgaacttggggcagagagtagcctaaaatagacagggcgagattattgattttgacggctctcttctttgaatctcgatcnnnnnnnttgg |
120 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||||||| |||||| ||| |||| |||||| |||||||| ||| ||||| | | || |
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|
| T |
24807644 |
tcaaggctttgaacttgagggagagagtagcctaaaatacgcagggcaagactattaattttgttggctctctgcttgaaatcttccttaaaaaactggg |
24807743 |
T |
|
| Q |
121 |
gggaaagtattttagaaagctcgtggacgatgaaaattggtatttgattctcaaacaaggcaagatcagacaagacatcatcgttttttagcacttgagg |
220 |
Q |
| |
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|| ||||| |||||||||| ||||||||||| |||| |||||||||||||| |||||| | ||||||||||||||||||||||||| ||||||||| | |
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| T |
24807744 |
ggaaaagtgttttagaaagggcgtggacgatggaaataggtatttgattctctaacaagacgagatcagacaagacatcatcgttttgaagcacttgaag |
24807843 |
T |
|
| Q |
221 |
tgc |
223 |
Q |
| |
|
||| |
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|
| T |
24807844 |
tgc |
24807846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 24799816 - 24799949
Alignment:
| Q |
182 |
aagatcagacaagacatcatcgttttttagcacttgaggtgcgaaaagacaaggagtaaagttcaattgacttgatagttgagaatcaagttcgagttct |
281 |
Q |
| |
|
||||| |||||||| ||||||||||| || |||||||||| || | ||||||| | ||||| | ||||||||||||||| || ||||| | | || |
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|
| T |
24799816 |
aagataagacaagatatcatcgttttggagaacttgaggtgtaaaggaaaaaggagtgacattcaagtaacttgatagttgagagtcgagttcaaatcct |
24799915 |
T |
|
| Q |
282 |
ttcgtgatgagaagctctagcagaaaacaaccat |
315 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| |
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|
| T |
24799916 |
ttcgtgattagaagctctagtagaaaacaaccat |
24799949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 393
Target Start/End: Original strand, 24807894 - 24808007
Alignment:
| Q |
280 |
ctttcgtgatgagaagctctagcagaaaacaaccatccactagcataattttcacgagttcgtatacttcaaggctgatgtcctccacgtaacttgctcg |
379 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||||||| |||| |||||||||| ||||||| | ||| | | |||||| |||||||||||||| || |
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|
| T |
24807894 |
cttttgtgatgagaagttctaacagaaaacaaccatcaactaccataattttcgcgagttcttgctcttgcaagtggatgtcatccacgtaacttgcacg |
24807993 |
T |
|
| Q |
380 |
aatctgatcattta |
393 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
24807994 |
aatctcttcattta |
24808007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 392
Target Start/End: Original strand, 24897365 - 24897466
Alignment:
| Q |
291 |
agaagctctagcagaaaacaaccatccactagcataattttcacgagttcgtatacttcaaggctgatgtcctccacgtaacttgctcgaatctgatcat |
390 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| ||||||||| ||||||| | | ||| ||| ||| || |||| || ||||||||||||||||||| |
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|
| T |
24897365 |
agaagctctaacagaaaacaaccatctactaacataatttttgcgagttcatgttgttctaggtcgatatcaaccacatagcttgctcgaatctgatcat |
24897464 |
T |
|
| Q |
391 |
tt |
392 |
Q |
| |
|
|| |
|
|
| T |
24897465 |
tt |
24897466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 24727839 - 24727880
Alignment:
| Q |
288 |
atgagaagctctagcagaaaacaaccatccactagcataatt |
329 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
24727839 |
atgagaagctctaacagaaaacatgcatccactagcataatt |
24727880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 24536933 - 24536873
Alignment:
| Q |
156 |
attggtatttgattctcaaacaaggcaagatcagacaagacatcatcgttttttagcactt |
216 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||||||||||| || | | ||||||||| |
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|
| T |
24536933 |
attggtatctgattctccaacaaggtgagatcagacaagacatcttcatctcttagcactt |
24536873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 24827686 - 24827738
Alignment:
| Q |
288 |
atgagaagctctagcagaaaacaaccatccactagcataattttcacgagttc |
340 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||| ||||||||| ||||||| |
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|
| T |
24827686 |
atgagaagctccaacagaaaacatccatccactaacataattttagcgagttc |
24827738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 24835437 - 24835489
Alignment:
| Q |
288 |
atgagaagctctagcagaaaacaaccatccactagcataattttcacgagttc |
340 |
Q |
| |
|
||||||||||||| ||||||||| ||||||| || ||||||||| ||||||| |
|
|
| T |
24835437 |
atgagaagctctaacagaaaacatccatccaataacataattttagcgagttc |
24835489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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