View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7457_high_7 (Length: 491)
Name: NF7457_high_7
Description: NF7457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7457_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 9 - 470
Target Start/End: Complemental strand, 32096310 - 32095854
Alignment:
| Q |
9 |
gaagaatatcaagattatcnnnnnnntgaactaatcaacatatcaacacaaatatacataactagcatttaagattgtcaccctttcaacnnnnnnnnnn |
108 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32096310 |
gaagaaaatcaagattatcaaaaaaatgaactaatcaacatatcaacacaaatatacataactagcatttaagattgtcaccctttcaacaaaaaaaa-- |
32096213 |
T |
|
| Q |
109 |
nnncatttaagattatcacctatatagtgttttgcaacttcatctttcttggaattcctgtgaagttcttctgcgcgaacacgtagctcatcattgcaac |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32096212 |
---catttaagattatcacctatatagtgttttgcaacttcatctttcttggaattcctgtgaagttcttctgcgcgaacacgtagctcatcattgcaac |
32096116 |
T |
|
| Q |
209 |
gccacatagaaagctaaagaaacaagaaaagaaatcagttaaatggtactnnnnnnntaaactaatcaaaatgttaatttcaaaaggagaaaaggggaga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32096115 |
gccacatagaaagctaaagaaacaagaaaagaaatcagttaaatggtactaaaaaaataaactaatcaaaatgttaatttcaaaaggagaaaaggggaga |
32096016 |
T |
|
| Q |
309 |
aatgtgaattacttcaaacataagatcttctatctgtgaataatacaaattagcagccatcattctagctaacaagcaaacatcccttgtcacttcagga |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32096015 |
aatgtgaattacttcaaacataagatcttctatctgtgaataatacaaattagcagccatcattctagctaacaagcaaacatcccttgtcacttcagga |
32095916 |
T |
|
| Q |
409 |
gtcactcttggattacctgcatcagatattatttcatttttaaaatcacattggatatgcgt |
470 |
Q |
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| T |
32095915 |
gtcactcttggattacctgcatcatatattatctcattttttaaatcacattggatatgcgt |
32095854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 407
Target Start/End: Original strand, 39538607 - 39538689
Alignment:
| Q |
325 |
aacataagatcttctatctgtgaataatacaaattagcagccatcattctagctaacaagcaaacatcccttgtcacttcagg |
407 |
Q |
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| T |
39538607 |
aacatgagatcctctatctgagagaagtacaaattagcagccatcattcgagctagtaaacacacatcccttgtaacttcagg |
39538689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 315 - 430
Target Start/End: Complemental strand, 22566400 - 22566285
Alignment:
| Q |
315 |
aattacttcaaacataagatcttctatctgtgaataatacaaattagcagccatcattctagctaacaagcaaacatcccttgtcacttcaggagtcact |
414 |
Q |
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||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||| |
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| T |
22566400 |
aattacttcaaacataagatcctctatttgggagtaatacaaattagcagccatcattctagccaataagcaaacatctcttgtcacttcaggagttact |
22566301 |
T |
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| Q |
415 |
cttggattacctgcat |
430 |
Q |
| |
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|||||||| ||||||| |
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| T |
22566300 |
cttggatttcctgcat |
22566285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 22566587 - 22566467
Alignment:
| Q |
125 |
cacctatatagtgttttgcaacttcatctttcttggaattcctgtgaagttcttctgcgcgaacacgtagctcatcattgcaacgccacatagaaagcta |
224 |
Q |
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||||||| ||||||||||||||| |||||||||||||| ||| | |||||||||||| |||||||||||||| ||||||||||||||||| || ||||| |
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| T |
22566587 |
cacctatgtagtgttttgcaactgcatctttcttggaagacctattaagttcttctgcacgaacacgtagctcgtcattgcaacgccacattgacagcta |
22566488 |
T |
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| Q |
225 |
aagaaacaagaaaagaaatca |
245 |
Q |
| |
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| T |
22566487 |
caaaaacaaaaagagaaatca |
22566467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 429
Target Start/End: Original strand, 30909012 - 30909089
Alignment:
| Q |
352 |
tacaaattagcagccatcattctagctaacaagcaaacatcccttgtcacttcaggagtcactcttggattacctgca |
429 |
Q |
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|||| ||||||||||||||||||||| | ||| || ||||||||||| ||||||||||| ||||| || || |||||| |
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| T |
30909012 |
tacagattagcagccatcattctagccagcaaacacacatcccttgtaacttcaggagttactctggggtttcctgca |
30909089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 30908782 - 30908831
Alignment:
| Q |
166 |
ctgtgaagttcttctgcgcgaacacgtagctcatcattgcaacgccacat |
215 |
Q |
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||||||||||| || || |||| |||||||||||||||||| |||||||| |
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| T |
30908782 |
ctgtgaagttcctcagcacgaatacgtagctcatcattgcagcgccacat |
30908831 |
T |
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