View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7457_low_11 (Length: 406)
Name: NF7457_low_11
Description: NF7457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7457_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 350
Target Start/End: Complemental strand, 17394100 - 17393751
Alignment:
| Q |
13 |
aatataccaagtatgtaaagctttgagatcctttgtagttgctatagtgaaagtcataccatgaccacctactttacaacactcaggggcaacatcatga |
112 |
Q |
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| T |
17394100 |
aatataccaagtatgtaaagctttgagatcctttgtagttgctatagtgaaagtcataccatgaccacctactttacaacactcaggggcaacatcatga |
17394001 |
T |
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| Q |
113 |
gcaaaaggagaaagcattacctgttattaagttctatagctgaaaaggtaatgggtaaaaagctacttcttcaaca------------aaattgaactgc |
200 |
Q |
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| T |
17394000 |
gcaaaaggagaaagcattacctgttattaagttctatagctgaaaaggtaatgggtaaaaagctatttcttcaacaaaatattaaataaaattgaactgc |
17393901 |
T |
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| Q |
201 |
tgttgaacatgaaaagcattacctgttttatttattagttgatgcaattttttgtttcttcatacttcaagttattgccaagggtgcaagtttacaacat |
300 |
Q |
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| T |
17393900 |
tattgaacatgaaaagcattatctgttttattcattagttgatgcaattttttgtttcttcatacttcaagttattgccaagggtgcaagtttacaacat |
17393801 |
T |
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| Q |
301 |
ctcactacttaaaactaccatgagcttccaagtatactcaacccttattt |
350 |
Q |
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| T |
17393800 |
ctcactacttaagactaccatgagcttccaagtatactcaacccttattt |
17393751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 15628436 - 15628518
Alignment:
| Q |
37 |
gagatcctttgtagttgctatagtgaaagtcataccatgaccacctactttacaacactcaggggcaacatcatgagcaaaag |
119 |
Q |
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| T |
15628436 |
gagatccttagtagttgctattgtgaaagccatgccatgaccacctatattaggatactcagggacaacagcaagagcaaaag |
15628518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 22933246 - 22933192
Alignment:
| Q |
27 |
gtaaagctttgagatcctttgtagttgctatagtgaaagtcataccatgaccacc |
81 |
Q |
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||||||| ||||||||||| |||| |||||| ||||||| ||| ||||||||||| |
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| T |
22933246 |
gtaaagcattgagatccttagtaggtgctattgtgaaagccatgccatgaccacc |
22933192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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