View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7457_low_17 (Length: 305)
Name: NF7457_low_17
Description: NF7457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7457_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 31605362 - 31605635
Alignment:
| Q |
19 |
cctaatggcggtccatcaggtacagccatgccaaaaattacaggaccaagcataaaatgttctccaataacttcactaaataacgagcagcctaataaca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31605362 |
cctaatggcggtccatcaggtacagccatgccaaaaattacaggaccaagcataaaatgttctccaataacctcactaaataacgagcagcctaataaca |
31605461 |
T |
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| Q |
119 |
ttaaaaataccgaaaatatgtacgattctttaatttgtttcccttctggtgtttgtcttatcatccaaaacattatgggacgtaaaacacatattgtgaa |
218 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31605462 |
ttaaaaataccgaaagtatgtacgattctttaatttgtttcccttctggtgtttgtcttatcatccaaaacattatgggacgtaaaacacatattgtgaa |
31605561 |
T |
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| Q |
219 |
agcaatcatagccagcaaacaaattgtcatcgaatctatagaagaactatctttccttgaatttgcttgtctct |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31605562 |
agcaatcatagccagcaaacaaattgtcatcgaatctatagaagaactatctttccttgaatttgcttgtctct |
31605635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 31595598 - 31595828
Alignment:
| Q |
19 |
cctaatggcggtccatcaggtacagccatgccaaaaattacaggaccaagcataaaatgttctccaataacttcactaaataacgagcagcctaataaca |
118 |
Q |
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|||||||| || || ||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||| || ||||||| ||||| || ||||||| |
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| T |
31595598 |
cctaatggaggcccgtcaggtacagccaagccaagaattacaggcccaagcgtaaaatgttctccaataacctccataaataatgagcaccccaataaca |
31595697 |
T |
|
| Q |
119 |
ttaaaaataccgaaaatatgtacgattctttaatttgtttcccttctggtgtttgtcttatcatccaaaacattatgggacgtaaaacacatattgtgaa |
218 |
Q |
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|||||| |||||||| || ||| |||||||||||| ||| |||||| ||||||||||||| |||||| |||||||||||||||| ||||||||||||||| |
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| T |
31595698 |
ttaaaattaccgaaagtacgtatgattctttaattggttgcccttcgggtgtttgtcttaccatccacaacattatgggacgtagaacacatattgtgaa |
31595797 |
T |
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| Q |
219 |
agcaatcatagccagcaaacaaattgtcatc |
249 |
Q |
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||||||||||| |||||||||||||||||| |
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| T |
31595798 |
ggcaatcatagctagcaaacaaattgtcatc |
31595828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 31579736 - 31579911
Alignment:
| Q |
19 |
cctaatggcggtccatcaggtacagccatgccaaaaattacaggaccaagcataaaatgttctccaataacttcactaaataacgagcagcctaataaca |
118 |
Q |
| |
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|||||||| || |||||||||||||||| || |||||||||||||||| |||| |||||||||||||||| ||||||||||| |||||||| |||| || |
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| T |
31579736 |
cctaatggaggcccatcaggtacagccagacctaaaattacaggaccaatcatataatgttctccaataacctcactaaataatgagcagcccaatatca |
31579835 |
T |
|
| Q |
119 |
ttaaaaataccgaaaatatgtacgattctttaatttgtttcccttctggtgtttgtcttatcatccaaaacattat |
194 |
Q |
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||||||| || ||||||||||| |||||||| ||| |||| ||||| ||||||| ||||||||||||||||||||| |
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| T |
31579836 |
ttaaaaacactgaaaatatgtatgattctttgattggttttccttcaggtgtttttcttatcatccaaaacattat |
31579911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 31564202 - 31564411
Alignment:
| Q |
19 |
cctaatggcggtccatcaggtacagccatgccaaaaattacaggaccaagcataaaatgttctccaataacttcactaaataacgagcagcctaataaca |
118 |
Q |
| |
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|||||||| |||||||||||||||||||| || ||||| |||| || | | | |||||||||| || | ||||||| || | |||||| | ||||| |
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| T |
31564202 |
cctaatggaggtccatcaggtacagccataccgaaaataacagtcccgactaaataatgttctccgattaactcactaacaaatgcgcagccgagtaaca |
31564301 |
T |
|
| Q |
119 |
ttaaaaataccgaaaatatgtacgattctttaatttgtttcccttctggtgtttgtcttatcatccaaaacattatgggacgtaaaacacatattgtgaa |
218 |
Q |
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||||||| || || | |||||| |||||||| ||| |||| ||||||||||||| ||||| |||||||| ||||||||| | | |||||||||| |||| |
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| T |
31564302 |
ttaaaaacacagacattatgtatgattctttgattggttttccttctggtgtttttcttaccatccaaagcattatgggtctaagaacacatattatgaa |
31564401 |
T |
|
| Q |
219 |
agcaatcata |
228 |
Q |
| |
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| ||| |||| |
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| T |
31564402 |
aacaaccata |
31564411 |
T |
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