View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7457_low_19 (Length: 284)
Name: NF7457_low_19
Description: NF7457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7457_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 52000473 - 52000210
Alignment:
| Q |
17 |
aggatcaagaacaaaggctacagctagctcgattgcaacaagatcaggaacaacaactatttttggctcagttgaaataggattaggagcaaccactacc |
116 |
Q |
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| T |
52000473 |
aggatcaagaacaaaggctacaactagctcgattgcaacaagatcaggaacaacaactatttttggctcagttgaaataggattaggagcaaccactact |
52000374 |
T |
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| Q |
117 |
agtggctcagttgcaacctgattaggaacaacaactagcactggcttagttgcaacaggatcaggaacaatgactacccctgacacagagttcatgtcca |
216 |
Q |
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| T |
52000373 |
agtggctcagttgcaacatgattaggaacaacaactagcactggcttagttgcaacaggatcaggaacaatgactacccctgacacagagttcatgtcca |
52000274 |
T |
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| Q |
217 |
agatgctattgctgctgcttcactaacagaatcagaatgaaggaatttcatagctaagatagaa |
280 |
Q |
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| T |
52000273 |
agatgctattgctgctgcttcactaacagaatcagaatgaaggaatttcatagctaagatagaa |
52000210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 277
Target Start/End: Original strand, 51999203 - 51999396
Alignment:
| Q |
84 |
tcagttgaaataggattaggagcaaccactaccagtggctcagttgcaacctgattaggaacaacaactagcactggcttagttgcaacaggatcaggaa |
183 |
Q |
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| T |
51999203 |
tcagttgcaataggattaggaacaacgactaccactcactcagttgcaacaggaacaagaacaacaactaccactggctcacttgcaactagatctggaa |
51999302 |
T |
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| Q |
184 |
caatgactacccctgacacagagttcatgtccaagatgctattgctgctgcttcactaacagaatcagaatgaaggaatttcatagctaagata |
277 |
Q |
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| T |
51999303 |
caacgactaccacttgcacaaagttcatgtccaacagactgctactgcgactacactaacagaatcggaacgatggaatttcaaagataagata |
51999396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 5300746 - 5300811
Alignment:
| Q |
121 |
gctcagttgcaacctgattaggaacaacaactagcactggcttagttgcaacaggatcaggaacaa |
186 |
Q |
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| T |
5300746 |
gctcagttgcaacgtgattaggaataacaactacatctgtctcagttgcaactggatcaggaacaa |
5300811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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