View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7457_low_2 (Length: 809)

Name: NF7457_low_2
Description: NF7457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7457_low_2
NF7457_low_2
[»] chr6 (1 HSPs)
chr6 (37-794)||(4914858-4915615)
[»] chr8 (7 HSPs)
chr8 (37-774)||(3010812-3011552)
chr8 (39-758)||(2931217-2931933)
chr8 (37-667)||(2921867-2922497)
chr8 (37-766)||(2947868-2948591)
chr8 (37-735)||(37796716-37797417)
chr8 (1-33)||(6540576-6540608)
chr8 (3-33)||(13255684-13255714)
[»] chr3 (4 HSPs)
chr3 (39-772)||(1505126-1505865)
chr3 (1-33)||(41968188-41968220)
chr3 (1-36)||(39984801-39984836)
chr3 (1-34)||(39983742-39983775)
[»] chr2 (4 HSPs)
chr2 (37-325)||(28025714-28026005)
chr2 (1-36)||(14684674-14684709)
chr2 (1-36)||(21306530-21306565)
chr2 (1-36)||(40421498-40421533)
[»] chr4 (2 HSPs)
chr4 (1-36)||(54938826-54938861)
chr4 (1-33)||(54937788-54937820)
[»] chr1 (2 HSPs)
chr1 (1-33)||(27962617-27962649)
chr1 (1-36)||(8090038-8090073)
[»] chr7 (1 HSPs)
chr7 (1-36)||(13077648-13077683)


Alignment Details
Target: chr6 (Bit Score: 734; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 734; E-Value: 0
Query Start/End: Original strand, 37 - 794
Target Start/End: Complemental strand, 4915615 - 4914858
Alignment:
Q  37 tcactccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaacccctttg 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4915615 tcactccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaaccactttg 4915516  T
Q  137 cagaagtttttccaaccatgaaccaattaagaatgacttcgaaggaggtctgtatccacatgtaactttaagccatctgccttcttttaggcctttcaag 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4915515 cagaagtttttccaaccatgaaccaattaagaatgacttcgaaggaggtctgtatccacatgtaactttaagccatctgccttcttttaggcctttcaag 4915416  T
Q  237 aacatctctggtaggttcactcccctatacttcagtttctgaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatctgcggctgaaa 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4915415 aacatctctggtaggttcactcccctatacttcagtttctgaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatctgcggctgaaa 4915316  T
Q  337 acccagcatttggaggagatatataaggtatgtcggaagctccaacatgggttttgaggaaaccaataagcttcccataatctgtatattggcctgcata 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4915315 acccagcatttggaggagatatataaggtatgtcggaagctccaacatgggttttgaggaaaccaataagcttcccataatctgtatattggcctgcata 4915216  T
Q  437 agaagatgcatttaggtacgcctttcctagctcgatgtaattttcatttctccatggattagaagaaacaatcaagcctgcccatttgctcacatttgca 536  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4915215 agaagatgcatttaggtacgcctttcctagctcgatgtaattttcataagtccatggattagaagaaacaatcaagcctgcccatttgctcacatttgca 4915116  T
Q  537 ggcacaagaacctcttgtctgcttttagttatacttccatagttgtccgcaagtggcatagatttacatagatcatcaacctcccgagttgacaaaaaac 636  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4915115 ggcacaagaacctcttgtctgcttttagttatacttccatagttgtccacaagtggcatagatttacatagatcatcaacctcgcgagttgacaaaaaac 4915016  T
Q  637 cgtttgacaaagagtggtataagaaatgagcataagcaatgacaagcttactattatcaatagaactgcagaggacatctgcaaaactgtacacattcag 736  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4915015 cgtttgacaaagagtggtataagaaatgagcataagcaatgacaagcttactattatcaatagaactgcagaggacatctgcaaaactgtacacattcag 4914916  T
Q  737 agtgagaacattaacatcatttgctaaccattccaacaaacgttggttcgtgtgcaat 794  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4914915 agtgagaacattaacatcatttgctaaccattccaacaaacgttggttcgtgtgcaat 4914858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 37 - 774
Target Start/End: Complemental strand, 3011552 - 3010812
Alignment:
Q  37 tcactccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaacccctttg 136  Q
    ||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||    
T  3011552 tcactccaattgttttcaactcctctttgtattcatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagtactaaaccactttg 3011453  T
Q  137 cagaagtttttccaaccatgaaccaattaagaatgacttcgaaggaggtctgtatcca---catgtaactttaagccatctgccttcttttaggcctttc 233  Q
    || ||||||| ||||  || | ||||||||||||||||| ||||||||  |||||| |   | |||||||||||||||  ||||| |||||| || || |    
T  3011452 caaaagttttcccaatgataagccaattaagaatgactttgaaggaggcatgtatctattacctgtaactttaagccagttgcctccttttaagcattcc 3011353  T
Q  234 aagaacatctctggtaggttcactcccctatacttcagtttctgaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatctgcggctg 333  Q
    |||||| ||||||||||||  |||||||| | |||||| | | ||||||| |||||||| | ||  ||||| |||||||||||||||||||| || ||||    
T  3011352 aagaacttctctggtaggtgaactccccttttcttcagatcccgaatccactccaaaagtagaaatgcattgtctttggtaagtggtgtatccgcagctg 3011253  T
Q  334 aaaacccagcatttggaggagatatataaggtatgtcggaagctccaacatgggttttgaggaaaccaataagcttcccataatctgtatattggcctgc 433  Q
    |||| | |||||||||||||||||||||||||||||| ||||||  |||||| |||||||||||  ||||||  |||||| ||||  ||| |||||||||    
T  3011252 aaaatctagcatttggaggagatatataaggtatgtcagaagctttaacatgagttttgaggaattcaataaatttcccagaatccatatgttggcctgc 3011153  T
Q  434 ataagaagatgcatttaggtacgcctttcctagctcgatgtaattttcatttctccatggattagaagaaacaatcaagcctgcccatttgctcacattt 533  Q
    |||||||||  |||||||||| |||||||||||||| |  |||||||||||||||||||||||   |||| |||||||| ||||||||||||||||||||    
T  3011152 ataagaagaatcatttaggtatgcctttcctagctcaacataattttcatttctccatggatt---agaaccaatcaagtctgcccatttgctcacattt 3011056  T
Q  534 gcaggcacaagaacctcttgtctgcttttagttatacttccatagttgtccgcaagtggcatagatttacatagatcatcaacctcccgagttgacaaaa 633  Q
    ||||||| ||||||| | | ||||||||||||||||| |||| | |||||| |||||||||||||  | |||| | ||| ||||||| ||  |||||||     
T  3011055 gcaggcagaagaaccccatttctgcttttagttatacgtccaaatttgtccacaagtggcatagaactgcataaagcattaacctcctgacatgacaaat 3010956  T
Q  634 aaccgtttgacaaagagtggtataagaaatgagcataagcaatgacaagcttac---tattatcaatagaactgcagaggacatctgcaaaactgtacac 730  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||| |   ||| || |||||||| ||||||||||| ||||||| ||| |||    
T  3010955 aaccctttgacaaagagtggtataagaaatgagcataagcaatggcaagcttgcagttatcattaatagaacggcagaggacatttgcaaaattgttcac 3010856  T
Q  731 attcagagtgagaacattaacatcatttgctaaccattccaaca 774  Q
    ||  ||| |  | |||||||| || ||||||| |||| ||||||    
T  3010855 atctagaatacggacattaacttcttttgctagccatcccaaca 3010812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 39 - 758
Target Start/End: Original strand, 2931217 - 2931933
Alignment:
Q  39 actccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaacccctttgca 138  Q
    ||||||| ||||||||| ||||||||||||| ||||||||| || ||||||||||| ||||| || | |||||| || |||||||||||||| |||||||    
T  2931217 actccaattgttttcaattcctctttgtactcatttattctctctccatagaagctttcatctattaagggaatatccacaagaactgaaccactttgca 2931316  T
Q  139 gaagtttttccaaccatgaaccaattaagaatgacttcgaaggaggtctgtatcca---catgtaactttaagccatctgccttcttttaggcctttcaa 235  Q
     ||  ||| ||||   ||||||||||||||||||||| |||||||   || |||||   |  |||||||||||||| ||||||||||||| || |  |||    
T  2931317 aaatatttcccaa---tgaaccaattaagaatgactttgaaggagacatgaatccattacccgtaactttaagccagctgccttcttttatgcatgccaa 2931413  T
Q  236 gaacatctctggtaggttcactcccctatacttcagtttctgaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatctgcggctgaa 335  Q
    |||| |||||||||||| ||||||| ||| |||||||| | |||||||||||||||| |||| ||||||||||||||| ||| | |||||||| ||||||    
T  2931414 gaacctctctggtaggtgcactcccttatgcttcagttcccgaatccaatccaaaagtaaaaaggcattttctttggtgagttgagtatctgcagctgaa 2931513  T
Q  336 aacccagcatttggaggagatatataaggtatgtcggaagctccaacatgggttttgaggaaaccaataagcttcccataatctgtatattggcctgcat 435  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||  ||||||||||  |||||||||||||| |||||||| ||||| ||||||    
T  2931514 aacccagcatttggaggagatagataaggtatgtcagaagctccaacatgatttttgaggaattcaataagcttcccagaatctgtagattggtctgcat 2931613  T
Q  436 aagaagatgcatttaggtacgcctttcctagctcgatgtaattttcatttctccatggattagaagaaacaatcaagcctgcccatttgctcacatttgc 535  Q
       |||||||||||||||||  |||||||||||| |  |||||||| ||||||||||||||   |||||| || ||| ||||||||||||| |||||| |    
T  2931614 ---aagatgcatttaggtacatctttcctagctcaacataattttcttttctccatggatt---agaaaccattaagtctgcccatttgctaacattttc 2931707  T
Q  536 aggcacaagaacctcttgtctgcttttagttatacttccatagttgtccgcaagtggcatagatttacatagatcatcaacctcccgagttgacaaaaaa 635  Q
    ||||| ||||||  | | ||| ||||||||||||| |||||  |||||| |||||||||||||  |||||| ||| ||||||||| ||  ||||||| ||    
T  2931708 aggcagaagaacaccatttctacttttagttatacgtccattcttgtccacaagtggcatagaactacataaatcgtcaacctcctgacatgacaaataa 2931807  T
Q  636 ccgtttgacaaagagtggtataagaaatgagcataagcaatgacaagcttac---tattatcaatagaactgcagaggacatctgcaaaactgtacacat 732  Q
    || | ||||||||| |||||||||||||||||||| |||| | ||||||| |   |||| | |||||||||| ||||| | | ||||||| ||||| |||    
T  2931808 ccttctgacaaagaatggtataagaaatgagcatatgcaacggcaagcttgcggttatttttaatagaactggagaggtcctttgcaaaaatgtacccat 2931907  T
Q  733 tcagagtgagaacattaacatcattt 758  Q
    |||||||| |||||||||||||||||    
T  2931908 tcagagtgtgaacattaacatcattt 2931933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 37 - 667
Target Start/End: Original strand, 2921867 - 2922497
Alignment:
Q  37 tcactccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaacccctttg 136  Q
    ||||||||| |||||||||||||||||  |||||||||||| ||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||    
T  2921867 tcactccaattgttttcaactcctcttcatacttatttattttatccccgtagaagctctcatcaatcaggggaatatcgacaagaactgaaccactttg 2921966  T
Q  137 cagaagtttttccaaccatgaaccaattaagaatgacttcgaaggaggtctgtatccaca---tgtaactttaagccatctgccttcttttaggcctttc 233  Q
    || || |||  ||||   | | | ||||||||||||||| |||||||| ||| || |||    ||||||||||||||| || |  |||||||  | ||||    
T  2921967 caaaattttccccaatggttagcgaattaagaatgactttgaaggaggcctgaattcaccggctgtaactttaagccagctacgatcttttatacatttc 2922066  T
Q  234 aagaacatctctggtaggttcactcccctatacttcagtttctgaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatctgcggctg 333  Q
    || ||| ||||||||||||  |||||| | |||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||||||||  |||| |    
T  2922067 aaaaacctctctggtaggtgtactcccttgtacttcagattccgaatccaatccaaaagcaaaaaggcattgtctttggtaagtggtgtatcaacggcgg 2922166  T
Q  334 aaaacccagcatttggaggagatatataaggtatgtcggaagctccaacatgggttttgaggaaaccaataagcttcccataatctgtatattggcctgc 433  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||  ||| ||| || |  || ||||| |||| |||||    
T  2922167 aaaacccagcatttggaggagatatataaggtatgtcagaagctccaacatgagttgtgaggaaattaattagcatctcggaacctgtaaattgacctgc 2922266  T
Q  434 ataagaagatgcatttaggtacgcctttcctagctcgatgtaattttcatttctccatggattagaagaaacaatcaagcctgcccatttgctcacattt 533  Q
    || ||| |||| |||||||||  | ||||| |||||||  ||||||||||| ||||| |||||   ||||||||||||| ||||||||||||||| ||||    
T  2922267 atgagatgatgaatttaggtaatcatttccaagctcgacataattttcattcctccaaggatt---agaaacaatcaagtctgcccatttgctcatattt 2922363  T
Q  534 gcaggcacaagaacctcttgtctgcttttagttatacttccatagttgtccgcaagtggcatagatttacatagatcatcaacctcccgagttgacaaaa 633  Q
    ||||||||||||||| | | ||| |||   || | ||  |||||||||||  ||||||||| ||| |||||||||  |||||| |||||  |||| ||||    
T  2922364 gcaggcacaagaaccccatttcttcttagtgtgacacacccatagttgtcaacaagtggcagagaattacatagactatcaacttcccgctttgaaaaaa 2922463  T
Q  634 aaccgtttgacaaagagtggtataagaaatgagc 667  Q
    |||| | || ||||||||||||||||||||||||    
T  2922464 aaccttgtggcaaagagtggtataagaaatgagc 2922497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 37 - 766
Target Start/End: Original strand, 2947868 - 2948591
Alignment:
Q  37 tcactccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaacccctttg 136  Q
    ||||||||||| |||| ||||| |||||||||  ||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  2947868 tcactccaactctttttaactcttctttgtacgcatttattctttccccatagaagctctcatcaatcagggggatgtcaacaagatctgaaccactttg 2947967  T
Q  137 cagaagtttttccaaccatgaaccaattaagaatgacttcgaaggaggtctgtatccaca---tgtaactttaagccatctgccttcttttaggcctttc 233  Q
    || ||   ||  |||  |||||  |||||||||||| || ||||||||  |||||| |     ||||||||||||||| ||||||| ||| | |  || |    
T  2947968 caaaaaaattctcaatgatgaatgaattaagaatgaatttgaaggaggcatgtatctattatgtgtaactttaagccagctgccttttttgatggattcc 2948067  T
Q  234 aagaacatctctggtaggttcactcccctatacttcagtttctgaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatctgcggctg 333  Q
     ||||| |||||||||| |          ||||| ||  ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||    
T  2948068 gagaacctctctggtagatc---------atactccatattctgaatccaatccaaaagcaaaaaggcattttctttggtaagtgttgtatctgcagctg 2948158  T
Q  334 aaaacccagcatttggaggagatatataaggtatgtcggaagctccaacatgggttttgaggaaaccaataagcttcccataatctgtatattggcctgc 433  Q
    | ||||||||||||||||||  |||| |||| ||||||||||||  ||||||| ||||||||||| |||||| | || || |||||||| ||||||||||    
T  2948159 acaacccagcatttggaggatgtataaaagggatgtcggaagctttaacatggcttttgaggaaagcaataaacatctcagaatctgtacattggcctgc 2948258  T
Q  434 ataagaagatgcatttaggtacgcctttcctagctcgatgtaattttcatttctccatggattagaagaaacaatcaagcctgcccatttgctcacattt 533  Q
    |||||||||||| ||||||||| ||||||||||||| |  ||||| |||| | |||||||||    ||||  | ||||   |||||||||||||||||||    
T  2948259 ataagaagatgcctttaggtacacctttcctagctcaacataattctcatctatccatggat---cagaattagtcaattgtgcccatttgctcacattt 2948355  T
Q  534 gcaggcacaagaacctcttgtctgcttttagttatacttccatagttgtccgcaagtggcatagatttacatagatcatcaacctcccgagttgacaaaa 633  Q
    ||||||| ||||||  | | |||    ||| |||||  |||||| |||||| |||||||||| |||||||||||||||  |||||||||| | | ||||     
T  2948356 gcaggcagaagaactccatctctttccttaattataagtccataattgtccacaagtggcatcgatttacatagatcacaaacctcccgactagtcaaat 2948455  T
Q  634 aaccgtttgacaaagagtggtataagaaatgagcataagcaatgacaagct---tactattatcaatagaactgcagaggacatctgcaaaactgtacac 730  Q
    |||| ||| |||||||||||| ||||||||||||||| |||| | ||||||   | || |||| ||||||  |||||||||| | ||||||||| | |||    
T  2948456 aaccctttaacaaagagtggtgtaagaaatgagcatatgcaacggcaagcttgctcctgttattaatagatttgcagaggacttttgcaaaactatccac 2948555  T
Q  731 attcagagtgagaacattaacatcatttgctaacca 766  Q
    |||||||||   |||||||||||  |||| ||||||    
T  2948556 attcagagtacaaacattaacatattttgttaacca 2948591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 37 - 735
Target Start/End: Original strand, 37796716 - 37797417
Alignment:
Q  37 tcactccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaacccctttg 136  Q
    ||||||||| |||||||||||||||||  ||||| |||||||||||||||||||||||||||||||| ||||| || |||||||| || ||||| |||||    
T  37796716 tcactccaattgttttcaactcctcttcatacttgtttattctatccccatagaagctctcatcaatgagggggatatcaacaagcaccgaaccactttg 37796815  T
Q  137 cagaagtttttccaaccatgaaccaattaagaatgacttcgaaggaggtctgtatccac--atg-taactttaagccatctgccttcttttaggcctttc 233  Q
    || || |||  ||||    || | ||||||||| ||||| |||||||| |||||||||   | | ||||||||||||| ||||| |||||||  | || |    
T  37796816 caaaattttccccaatggcgagcgaattaagaacgactttgaaggaggactgtatccattaacgataactttaagccagctgccatcttttatacattcc 37796915  T
Q  234 aagaacatctctggtaggttcactcccctatacttcagtttctgaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatctgcggctg 333  Q
    || ||| ||||||| |||| ||||||||| | |||||| ||| ||||||||||||||||||||| |||||| | ||||||||||||||| ||  | ||||    
T  37796916 aaaaacctctctggaaggtgcactcccctgtgcttcagattccgaatccaatccaaaagcaaaaaggcattgtttttggtaagtggtgtgtcaacagctg 37797015  T
Q  334 aaaacccagcatttggaggagatatataaggtatgtcggaagctccaacatgggttttgaggaaaccaataagcttcccataatctgtatattggcctgc 433  Q
    |||||||||||||||| |||||||||| ||| ||||| |||||| ||||||| ||| |||||||| |||||||||| ||  || ||||| ||||||||||    
T  37797016 aaaacccagcatttggtggagatatatgaggaatgtcagaagcttcaacatgagttgtgaggaaatcaataagctttccggaacctgtaaattggcctgc 37797115  T
Q  434 ataagaagatgcatttaggtacgcctttcctagctcgatgtaattttcatttctccatggattagaagaaacaatcaagcctgcccatttgctcacattt 533  Q
    |||||| || | |||||||||| ||||||| ||||| |  |||||||| || ||||| |||||   ||||||||| ||| ||||||||||||| ||||||    
T  37797116 ataagatgaggtatttaggtactcctttccgagctcaacataattttccttcctccaaggatt---agaaacaattaagtctgcccatttgctaacattt 37797212  T
Q  534 gcaggcacaagaacctcttgtctgcttttagttatacttccatagttgtccgcaagtggcatagatttacatagatcatcaacctcccgagttgacaaaa 633  Q
    ||||||||||||||| | | |||  |||   | | ||  |||||||||||  |||||||||||||  ||||||||  ||||||||||||  ||||||||     
T  37797213 gcaggcacaagaaccccctttcttgtttctatgacacacccatagttgtcaacaagtggcatagagctacatagactatcaacctcccgctttgacaaat 37797312  T
Q  634 aaccgtttgacaaagagtggtataagaaatgagcataagcaatgacaagcttac---tattatcaatagaactgcagaggacatctgcaaaactgtacac 730  Q
    |     |||| ||||||||||| || ||||||||||| | |||| || | || |   |||| | || |||||||||||||||||  ||||||||||||||    
T  37797313 acttcattgataaagagtggtacaaaaaatgagcatatgtaatggcatgtttgctgttatttttaagagaactgcagaggacattggcaaaactgtacac 37797412  T
Q  731 attca 735  Q
     ||||    
T  37797413 gttca 37797417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 6540608 - 6540576
Alignment:
Q  1 attttattcttctatatcagttggtttctatca 33  Q
    |||||||||||||||||||||||||||||||||    
T  6540608 attttattcttctatatcagttggtttctatca 6540576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 13255684 - 13255714
Alignment:
Q  3 tttattcttctatatcagttggtttctatca 33  Q
    |||||||||||||||||||||||||||||||    
T  13255684 tttattcttctatatcagttggtttctatca 13255714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 39 - 772
Target Start/End: Complemental strand, 1505865 - 1505126
Alignment:
Q  39 actccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaacccctttgca 138  Q
    ||||| ||| |||||||||| ||| |||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||||    
T  1505865 actccgactattttcaactcttctgtgtactcatttattctattcccgtagaagctctcgtcaatcaggggaatgtcaacaagaaatgaaccactttgca 1505766  T
Q  139 gaagtttttccaaccatgaaccaattaagaatgacttcgaaggaggtctgtatcca------catgtaactttaagccatctgccttcttttaggccttt 232  Q
     || |||   |||  |||| ||||||||||||||||| || |||||  ||||||||      |||||||||||||||||  |||| | ||||| || ||     
T  1505765 aaattttccgcaatgatgagccaattaagaatgactttgagggaggcatgtatccattactacatgtaactttaagccagttgcccttttttatgcattc 1505666  T
Q  233 caagaacatctctggtaggttcactcccctatacttcagtttctgaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatctgcggct 332  Q
    ||||||| ||| |||||||| |||||||||||||||||| ||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  1505665 caagaacctctgtggtaggtgcactcccctatacttcagattccgaatccaatccaaaagcaaaaaggcattgtctttggtaagtggtgtatctgcggct 1505566  T
Q  333 gaaaacccagcatttggaggagatatataaggtatgtcggaagctccaacatgggttttgaggaaaccaataagcttcccataatctgtatattggcctg 432  Q
    |||||||||||||||||||||||||| |||||||  |||||||||| |||||||| |||||||||| |||||||| ||| | |   || || ||| ||||    
T  1505565 gaaaacccagcatttggaggagatatgtaaggtacatcggaagctctaacatgggctttgaggaaatcaataagcatcctagagcttgaattttgacctg 1505466  T
Q  433 cataagaagatgcatttaggtacgcctttcctagctcgatgtaattttcatttctccatggattagaagaaacaatcaagcctgcccatttgctcacatt 532  Q
    |||||||||||||||||||||||||||||||||| || |  |||  ||||||||||||||||||   ||||||||||||| | |||||||||||||||||    
T  1505465 cataagaagatgcatttaggtacgcctttcctagttcaacataaccttcatttctccatggatt---agaaacaatcaagtcagcccatttgctcacatt 1505369  T
Q  533 tgcaggcacaagaacctcttgtctgcttttagttatacttccatagttgtccgcaagtggcatagatttacatagatcatcaacctcccgagttgacaaa 632  Q
    |||||||| ||||||  ||| ||| ||| ||| ||||| |||||| || ||| ||||||||||| |  | ||||   ||||||| || ||| | |||||     
T  1505368 tgcaggcagaagaactccttttctacttctagctatacatccataattatccacaagtggcataaaactgcataagccatcaacttctcgactcgacaag 1505269  T
Q  633 aaaccgtttgacaaagagtggtataagaaatgagcataagcaatgacaagcttac---tattatcaatagaactgcagaggacatctgcaaaactgtaca 729  Q
     |||| |||||||||||||||||||||||||||||||| |||||| |||| || |   |||||| ||||||||||| |||||||   |||||| |||| |    
T  1505268 taaccctttgacaaagagtggtataagaaatgagcatatgcaatggcaagtttgcagttattattaatagaactgcggaggacactagcaaaagtgtaaa 1505169  T
Q  730 cattcagagtgagaacattaacatcatttgctaaccattccaa 772  Q
    |||||  |||   || ||||||||| ||||||||||| |||||    
T  1505168 cattcgtagtagcaatattaacatcttttgctaaccaatccaa 1505126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41968220 - 41968188
Alignment:
Q  1 attttattcttctatatcagttggtttctatca 33  Q
    |||||||||||||||||||||||||||||||||    
T  41968220 attttattcttctatatcagttggtttctatca 41968188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 39984836 - 39984801
Alignment:
Q  1 attttattcttctatatcagttggtttctatcaact 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39984836 attttattcttctatatcagttgatttctatcaact 39984801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 39983775 - 39983742
Alignment:
Q  1 attttattcttctatatcagttggtttctatcaa 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  39983775 attttattcttctatatcagttgatttctatcaa 39983742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 1e-65; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 37 - 325
Target Start/End: Original strand, 28025714 - 28026005
Alignment:
Q  37 tcactccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaacccctttg 136  Q
    ||||||| || ||||||||||| ||||  ||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||    
T  28025714 tcactcctacagttttcaactcttcttcatacttgtttattctatccccatagaagctctcgtcaatcagggggatatcaacaagaactgaaccactttg 28025813  T
Q  137 cagaagtttttccaaccatgaaccaattaagaatgacttcgaaggaggtctgtatccacatg----taactttaagccatctgccttcttttaggccttt 232  Q
    || || |||| ||||    || | ||||||||| ||||| |||||||| ||||||||| |||    ||||||||||||| ||||| |||||||  | |||    
T  28025814 caaaaattttcccaatggcgagcgaattaagaacgactttgaaggaggcctgtatcca-atgacggtaactttaagccagctgccatcttttatacattt 28025912  T
Q  233 caagaacatctctggtaggttcactcccctatacttcagtttctgaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatc 325  Q
    ||| ||| ||||||||||||||||||||||  ||||||| ||| ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  28025913 caaaaacctctctggtaggttcactcccctggacttcaggttccgaatccaatccaaaagcaagaaggcattttctttggtaagtggtgtatc 28026005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 14684674 - 14684709
Alignment:
Q  1 attttattcttctatatcagttggtttctatcaact 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14684674 attttattcttctatatcagttgatttctatcaact 14684709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21306530 - 21306565
Alignment:
Q  1 attttattcttctatatcagttggtttctatcaact 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  21306530 attttattcttctatatcagttgatttctatcaact 21306565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 40421498 - 40421533
Alignment:
Q  1 attttattcttctatatcagttggtttctatcaact 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  40421498 attttattcttctatatcagttgatttctatcaact 40421533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 54938861 - 54938826
Alignment:
Q  1 attttattcttctatatcagttggtttctatcaact 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  54938861 attttattcttctatatcagttggtttctatcaact 54938826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 54937820 - 54937788
Alignment:
Q  1 attttattcttctatatcagttggtttctatca 33  Q
    |||||||||||||||||||||||||||||||||    
T  54937820 attttattcttctatatcagttggtttctatca 54937788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 27962649 - 27962617
Alignment:
Q  1 attttattcttctatatcagttggtttctatca 33  Q
    |||||||||||||||||||||||||||||||||    
T  27962649 attttattcttctatatcagttggtttctatca 27962617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 8090073 - 8090038
Alignment:
Q  1 attttattcttctatatcagttggtttctatcaact 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8090073 attttattcttctatatcagttgatttctatcaact 8090038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 13077648 - 13077683
Alignment:
Q  1 attttattcttctatatcagttggtttctatcaact 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  13077648 attttattcttctatatcagttgatttctatcaact 13077683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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