View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7457_low_23 (Length: 257)
Name: NF7457_low_23
Description: NF7457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7457_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 20597615 - 20597684
Alignment:
| Q |
19 |
ttagtagtgatattaattttatgaaatgttatatttgtaggcgtgcaaatgagtttgattatgaagttag |
88 |
Q |
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| T |
20597615 |
ttagtagtgatattaattttatgaaatgttatatttgtaggcgtgcaaatgagtttgattatgaagttag |
20597684 |
T |
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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 8698618 - 8698685
Alignment:
| Q |
21 |
agtagtgatattaattttatgaaatgttatatttgtaggcgtgcaaatgagtttgattatgaagttag |
88 |
Q |
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| T |
8698618 |
agtagcgatactaattttatgaaatgttatatttgtaggcgtgcaaatgagtttgattatgaagttag |
8698685 |
T |
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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 20410534 - 20410595
Alignment:
| Q |
143 |
gatatggtgacagagacatacacaatgttgcttccacctaaaggttttgattatagaactcc |
204 |
Q |
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| T |
20410534 |
gatatggtgacagagacatacacaatgttgcttccacatcaaggttttgattatagaactcc |
20410595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 20452698 - 20452747
Alignment:
| Q |
155 |
gagacatacacaatgttgcttccacctaaaggttttgattatagaactcc |
204 |
Q |
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| T |
20452698 |
gagacatacacaatgttgcttccacatcaaggttttgattatagaactcc |
20452747 |
T |
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