View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7457_low_24 (Length: 242)

Name: NF7457_low_24
Description: NF7457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7457_low_24
NF7457_low_24
[»] chr2 (20 HSPs)
chr2 (1-224)||(34236038-34236257)
chr2 (72-170)||(32521545-32521644)
chr2 (72-183)||(41594152-41594264)
chr2 (74-183)||(4171597-4171707)
chr2 (72-183)||(7877525-7877637)
chr2 (72-183)||(12806619-12806731)
chr2 (72-183)||(38873542-38873654)
chr2 (72-170)||(19204662-19204761)
chr2 (87-184)||(17457918-17458016)
chr2 (71-139)||(3371547-3371616)
chr2 (72-184)||(18369213-18369326)
chr2 (72-157)||(29683246-29683331)
chr2 (111-183)||(3371412-3371484)
chr2 (72-139)||(3948434-3948502)
chr2 (72-139)||(7877394-7877462)
chr2 (103-183)||(10748695-10748775)
chr2 (111-183)||(14379314-14379386)
chr2 (72-139)||(18369083-18369151)
chr2 (72-139)||(29683419-29683487)
chr2 (72-139)||(42705197-42705265)
[»] chr7 (9 HSPs)
chr7 (72-183)||(35026514-35026626)
chr7 (72-183)||(31579632-31579744)
chr7 (72-170)||(40729133-40729232)
chr7 (72-183)||(13426493-13426605)
chr7 (72-183)||(42516937-42517049)
chr7 (72-139)||(44483471-44483539)
chr7 (72-183)||(19157763-19157875)
chr7 (72-183)||(20757162-20757274)
chr7 (72-183)||(22364853-22364964)
[»] chr8 (10 HSPs)
chr8 (73-183)||(6891849-6891960)
chr8 (73-183)||(31186445-31186555)
chr8 (87-183)||(13405533-13405630)
chr8 (72-183)||(24332332-24332444)
chr8 (72-183)||(31685740-31685852)
chr8 (117-170)||(11744808-11744861)
chr8 (111-183)||(3272830-3272902)
chr8 (72-139)||(9180290-9180358)
chr8 (111-183)||(13154349-13154421)
chr8 (72-167)||(18764502-18764598)
[»] chr5 (15 HSPs)
chr5 (73-183)||(43197102-43197213)
chr5 (72-183)||(10461546-10461658)
chr5 (73-170)||(40588864-40588961)
chr5 (111-183)||(15969540-15969612)
chr5 (111-183)||(18786182-18786254)
chr5 (72-183)||(41137211-41137323)
chr5 (73-139)||(4122648-4122715)
chr5 (73-156)||(40589481-40589564)
chr5 (114-183)||(14868786-14868855)
chr5 (72-183)||(5933326-5933438)
chr5 (111-183)||(6542460-6542532)
chr5 (72-139)||(18786051-18786119)
chr5 (72-183)||(22394325-22394437)
chr5 (72-183)||(24491044-24491156)
chr5 (111-183)||(29991212-29991284)
[»] scaffold0126 (1 HSPs)
scaffold0126 (111-183)||(36195-36267)
[»] chr1 (13 HSPs)
chr1 (72-169)||(18963679-18963777)
chr1 (71-183)||(14602079-14602192)
chr1 (72-183)||(28031717-28031829)
chr1 (72-183)||(37172449-37172561)
chr1 (111-183)||(39288355-39288427)
chr1 (72-170)||(20062012-20062111)
chr1 (71-183)||(33626-33739)
chr1 (72-183)||(10913844-10913956)
chr1 (72-139)||(20061868-20061936)
chr1 (73-150)||(39288224-39288303)
chr1 (72-183)||(42154820-42154932)
chr1 (72-183)||(50096203-50096315)
chr1 (72-183)||(50624836-50624948)
[»] chr3 (15 HSPs)
chr3 (72-184)||(16056418-16056531)
chr3 (72-183)||(29838495-29838607)
chr3 (111-183)||(32315577-32315649)
chr3 (72-183)||(49499913-49500025)
chr3 (72-139)||(49500088-49500156)
chr3 (72-183)||(52835615-52835727)
chr3 (72-170)||(27285183-27285282)
chr3 (72-170)||(49121786-49121885)
chr3 (71-170)||(14546050-14546150)
chr3 (111-183)||(26582813-26582885)
chr3 (111-183)||(27934561-27934633)
chr3 (72-183)||(33162521-33162633)
chr3 (72-183)||(38807608-38807720)
chr3 (111-183)||(46962783-46962855)
chr3 (72-183)||(50645542-50645654)
[»] scaffold0170 (2 HSPs)
scaffold0170 (72-183)||(8743-8855)
scaffold0170 (72-139)||(8612-8680)
[»] scaffold0167 (1 HSPs)
scaffold0167 (72-183)||(4588-4700)
[»] chr6 (11 HSPs)
chr6 (72-183)||(3484854-3484966)
chr6 (72-183)||(29819456-29819568)
chr6 (72-183)||(30609067-30609179)
chr6 (72-183)||(31717245-31717357)
chr6 (72-170)||(19661419-19661518)
chr6 (72-170)||(33783611-33783710)
chr6 (72-139)||(3345090-3345158)
chr6 (111-183)||(8926297-8926369)
chr6 (111-183)||(8936554-8936626)
chr6 (72-183)||(28853555-28853667)
chr6 (72-139)||(30608936-30609004)
[»] chr4 (15 HSPs)
chr4 (72-183)||(2184595-2184707)
chr4 (72-183)||(5721022-5721134)
chr4 (72-183)||(37815411-37815523)
chr4 (73-183)||(11021744-11021855)
chr4 (72-137)||(26314546-26314611)
chr4 (111-183)||(989276-989348)
chr4 (72-139)||(4712423-4712491)
chr4 (72-183)||(16959965-16960077)
chr4 (72-183)||(17107502-17107614)
chr4 (72-139)||(17865221-17865289)
chr4 (111-183)||(22487330-22487402)
chr4 (72-139)||(22487465-22487533)
chr4 (72-183)||(43750017-43750129)
chr4 (111-183)||(46081575-46081647)
chr4 (111-183)||(46481027-46481099)
[»] scaffold0817 (2 HSPs)
scaffold0817 (111-183)||(4093-4165)
scaffold0817 (72-139)||(4227-4295)
[»] scaffold0137 (2 HSPs)
scaffold0137 (72-139)||(36835-36903)
scaffold0137 (111-183)||(36966-37038)
[»] scaffold0028 (1 HSPs)
scaffold0028 (72-139)||(74159-74227)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 34236257 - 34236038
Alignment:
Q  1 taaatacacaaatcttcaccgcaaacatcaactgttttgattttattcattgtaaaaatacnnnnnnnnnagttttagtccttgccaatataaaacattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  34236257 taaatacacaaatcttcaccgcaaacatcaactgttttgattttattcattgtaaaaatactttttttt-agttttagtccttgccaatataaaacattt 34236159  T
Q  101 tgtttggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactccttcaaccaaatttactcc 200  Q
    ||||||||||||   |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||    
T  34236158 tgtttggacatt---attttgttttactctttgtaaaatatattcatattaaaattgtttcttataatatatattttaatcctttaaccaaatttactcc 34236062  T
Q  201 attttttcatttgatttctatcat 224  Q
    ||||||||||||||||||||||||    
T  34236061 attttttcatttgatttctatcat 34236038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 32521545 - 32521644
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||||||  ||||||||| |||| |||| || | |||||||||||||||| ||||||||||||   |||||||| |||||| ||||||||||||    
T  32521545 gttttagtccttgtaaatataaaatatttggttttggtctttggtattttgttttaatctttgtaaaatcatttcatattgaaattggtccttataatat 32521644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 41594264 - 41594152
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| ||||||||| |||| |||| || ||||| |||||||||||| || |||||||||   ||||||||||||||| ||| ||||||||    
T  41594264 gttttagtccctgcaaatataaaatatttggttttggtcattgatattttgttttaatccttgtaaaatcatttcatattaaaattggtccctataatat 41594165  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  41594164 tcattttagtcct 41594152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 4171597 - 4171707
Alignment:
Q  74 tttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatat 172  Q
    |||||||| ||| |||||| ||||||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||      
T  4171597 tttagtccctgcaaatatagaacatttggttttggtctttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatattc 4171696  T
Q  173 attttactcct 183  Q
    |||||| ||||    
T  4171697 attttagtcct 4171707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 7877637 - 7877525
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| ||||||  || ||||||||    
T  7877637 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattgaaccctataatat 7877538  T
Q  171 atattttactcct 183  Q
     ||||||| ||||    
T  7877537 ttattttagtcct 7877525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 12806619 - 12806731
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgtttgga-cattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  12806619 gttttagtccctgcaaatatagaatatttggttttgatccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 12806718  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  12806719 tcattttagtcct 12806731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 38873542 - 38873654
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||||||| |||||| || |||| |||| || | |||||||||||||||| |  |||||||||   |||||||| |||||| ||| ||||||||    
T  38873542 gttttagtccttgcaaatatagaatatttggttttggtccttggtattttgttttaattcttgtaaaatcatttcatattgaaattggtccctataatat 38873641  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  38873642 tcattttagtcct 38873654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 19204662 - 19204761
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  19204662 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 19204761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 17458016 - 17457918
Alignment:
Q  87 aatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcctt 184  Q
    ||||||||| |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| |||||    
T  17458016 aatataaaatatttagttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatattcattttagtcctt 17457918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 3371616 - 3371547
Alignment:
Q  71 agttttagtccttgccaatataaaacattttgtttgga-cattggtattttgttttactctttgtaaaat 139  Q
    ||||||||||| ||| ||||||||| |||| |||| || | |||||||||||||||| || |||||||||    
T  3371616 agttttagtccctgcaaatataaaaaatttggttttgatccttggtattttgttttagtccttgtaaaat 3371547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 184
Target Start/End: Complemental strand, 18369326 - 18369213
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || ||||| |||||||||||| || |||||||||   |||||||| | |||| ||| ||||||||    
T  18369326 gttttagtccctgcaaatatagaatatttggttttggtcattgatattttgttttaatccttgtaaaatcatttcatattgagattggtccctataatat 18369227  T
Q  171 atattttactcctt 184  Q
      |||||| |||||    
T  18369226 tcattttagtcctt 18369213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 29683246 - 29683331
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgtttggacattggtattttgttttactctttgtaaaatatgttcatattaaaattg 157  Q
    ||||||| || ||| |||||| || |||| |||||| | |||||||||||||||| || |||||||||   |||||||| ||||||    
T  29683246 gttttagcccctgcaaatatagaatatttggtttggcccttggtattttgttttaatccttgtaaaatcatttcatattgaaattg 29683331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 3371412 - 3371484
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  3371412 ttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatattcattttagtcct 3371484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 3948434 - 3948502
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||| ||| ||||||||| |||| |||| || | |||||||||||||||| || |||||||||    
T  3948434 gttttagtccctgcaaatataaaaaatttggtttcggtccttggtattttgttttagtccttgtaaaat 3948502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 7877394 - 7877462
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||| ||| ||||||||| |||| |||| || | |||||||||||||||| || |||||||||    
T  7877394 gttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttttagtccttgtaaaat 7877462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 10748775 - 10748695
Alignment:
Q  103 tttggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    ||||| |||||||||||||||||| || |||||||||   |||||||| |||||| ||  ||||||||  |||||| ||||    
T  10748775 tttggtcattggtattttgttttaatccttgtaaaatcatttcatattgaaattggtctctataatattcattttagtcct 10748695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 14379386 - 14379314
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  14379386 ttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatattcattttagtcct 14379314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 18369083 - 18369151
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||| ||| ||||||||| |||| |||| || | |||||||||||||||| || |||||||||    
T  18369083 gttttagtccctgcaaatataaaaaatttggttttggtctttggtattttgttttagtccttgtaaaat 18369151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 29683487 - 29683419
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||| ||| ||||||||| |||| |||| || | |||||||||||||||| || |||||||||    
T  29683487 gttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttttagtccttgtaaaat 29683419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 42705265 - 42705197
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||  ||| ||||||||| |||| |||| |||| |||||||||||||||| || |||||||||    
T  42705265 gttttagtcagtgcaaatataaaaaatttggttttggaccttggtattttgttttaatccttgtaaaat 42705197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 35026514 - 35026626
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgtttgga-cattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || |||||||||||||||||| || |||||||||   ||||||||||||||| ||| ||||||||    
T  35026514 gttttagtccatgcaaatatagaatatttggttttgatcattggtattttgttttaatccttgtaaaatcatttcatattaaaattggtccctataatat 35026613  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  35026614 tcattttagtcct 35026626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 31579744 - 31579632
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| ||||||||| ||||  ||| || | |||||||||||||||| || |||||||||   ||||||||||||||| ||| ||||||||    
T  31579744 gttttagtccctgcaaatataaaatatttgattttggtctttggtattttgttttaatccttgtaaaatcatttcatattaaaattggtccctataatat 31579645  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  31579644 tcattttagtcct 31579632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 40729133 - 40729232
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   ||||||||||||||| ||| ||||||||    
T  40729133 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattaaaattggtccctataatat 40729232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 13426605 - 13426493
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  13426605 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 13426506  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  13426505 tcattttagtcct 13426493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 42516937 - 42517049
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  42516937 gttttagtccctgcaaatatagaatatttagttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 42517036  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  42517037 tcattttagtcct 42517049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 44483539 - 44483471
Alignment:
Q  72 gttttagtccttgccaatataaaacattttg--tttggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||| ||| ||||||||| ||||||  ||||| |||||||||||||||||| || |||||||||    
T  44483539 gttttagtccctgcaaatataaaa-attttggttttggtcattggtattttgttttagtccttgtaaaat 44483471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 19157763 - 19157875
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| | ||||||    
T  19157763 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctgtaatat 19157862  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  19157863 tcattttagtcct 19157875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 20757162 - 20757274
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| | ||||||    
T  20757162 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctgtaatat 20757261  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  20757262 tcattttagtcct 20757274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 22364964 - 22364853
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgtttgga-cattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  22364964 gttttagtccctgcaaatatagaatatttggttttgatccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtcc-tataatat 22364866  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  22364865 tcattttagtcct 22364853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 6891849 - 6891960
Alignment:
Q  73 ttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatata 171  Q
    ||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   ||||||||||||||| ||| ||||||||     
T  6891849 ttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattaaaattggtccctataatatt 6891948  T
Q  172 tattttactcct 183  Q
    ||||||| ||||    
T  6891949 tattttagtcct 6891960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 31186445 - 31186555
Alignment:
Q  73 ttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatata 171  Q
    ||||||||| ||| |||||| || |||| |||| || |||||||||||||||||| || |||||||||   ||||||||||||| | ||||||||||||     
T  31186445 ttttagtccctgcaaatatagaatatttggttttggtcattggtattttgttttaatc-ttgtaaaatcatttcatattaaaatcggtccttataatatt 31186543  T
Q  172 tattttactcct 183  Q
     |||||| ||||    
T  31186544 cattttagtcct 31186555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 13405533 - 13405630
Alignment:
Q  87 aatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||| || ||||||||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||||||||||||  |||||| ||||    
T  13405533 aatatagaatattttgttttggtctttggtattttgttttaatcattgtaaaatcatttcatattgaaattggtccttataatattcattttagtcct 13405630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 24332332 - 24332444
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgtttgga-cattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| ||||||  | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  24332332 gttttagtccctgcaaatatagaatatttggtttgggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 24332431  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  24332432 tcattttagtcct 24332444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 31685740 - 31685852
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  31685740 gttttagtccatgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 31685839  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  31685840 tcattttagtcct 31685852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 11744808 - 11744861
Alignment:
Q  117 ttttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| || ||||||||| | ||||||||||||||| | ||||||||||    
T  11744808 ttttgttttagtcattgtaaaatctattcatattaaaattgatacttataatat 11744861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 3272830 - 3272902
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  3272830 ttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatattcattttagtcct 3272902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 9180358 - 9180290
Alignment:
Q  72 gttttagtccttgccaatataaaacattttg-tttggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||||||| ||||||||| |||| | ||||| | ||| |||||||||||| || |||||||||    
T  9180358 gttttagtccttgcaaatataaaaaatttggttttggtccttgatattttgttttagtccttgtaaaat 9180290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 13154349 - 13154421
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  13154349 ttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatattcattttagtcct 13154421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 167
Target Start/End: Complemental strand, 18764598 - 18764502
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataa 167  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| |||||    
T  18764598 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataa 18764502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 43197213 - 43197102
Alignment:
Q  73 ttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatata 171  Q
    ||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   ||||||||||||||| ||| ||||||||     
T  43197213 ttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattaaaattggtccctataatatt 43197114  T
Q  172 tattttactcct 183  Q
    ||||||| ||||    
T  43197113 tattttagtcct 43197102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 10461658 - 10461546
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || |||||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  10461658 gttttagtccctgcaaatatagaatatttggttttggtcattggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 10461559  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  10461558 tcattttagtcct 10461546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 40588961 - 40588864
Alignment:
Q  73 ttttagtccttgccaatataaaacattttgtttggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    ||||||||| ||| ||||||||| |||| |||||  | |||||||||||||||| |  |||||||||   ||||||||||||||| ||  ||||||||    
T  40588961 ttttagtccctgcaaatataaaatatttggtttgatccttggtattttgttttaattcttgtaaaatcatttcatattaaaattggtctctataatat 40588864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 15969540 - 15969612
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||||||||||||  |||||| ||||    
T  15969540 ttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccttataatattcattttagtcct 15969612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 18786254 - 18786182
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   ||||||||||||||| ||| ||||||||  |||||| ||||    
T  18786254 ttggtattttgttttaatccttgtaaaatcatttcatattaaaattggtccctataatattcattttagtcct 18786182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 41137211 - 41137323
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||||||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||| | ||| ||||||||    
T  41137211 gttttagtccttgcaaatatagaatatttagttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaatcggtccctataatat 41137310  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  41137311 tcattttagtcct 41137323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 4122648 - 4122715
Alignment:
Q  73 ttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaat 139  Q
    ||||||||| ||| ||||||||| |||| |||| || | |||||||||||||||| ||||||||||||    
T  4122648 ttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttttagtctttgtaaaat 4122715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 156
Target Start/End: Complemental strand, 40589564 - 40589481
Alignment:
Q  73 ttttagtccttgccaatataaaacattttgtttggacattggtattttgttttactctttgtaaaatatgttcatattaaaatt 156  Q
    ||||||||| ||| ||||||||| |||| |||||  | |||||||||||||||| |  |||||||||   ||||||||||||||    
T  40589564 ttttagtccctgcaaatataaaatatttggtttgatccttggtattttgttttaattcttgtaaaatcatttcatattaaaatt 40589481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 14868786 - 14868855
Alignment:
Q  114 gtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    ||||||||||||| || |||||||||   |||||||| |||||| ||| |||||||| ||||||| ||||    
T  14868786 gtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatatttattttagtcct 14868855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 5933438 - 5933326
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||| | ||| ||||||||    
T  5933438 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaatcggtccctataatat 5933339  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  5933338 tcattttagtcct 5933326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 6542532 - 6542460
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  6542532 ttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatattcattttaatcct 6542460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 18786051 - 18786119
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||||||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||    
T  18786051 gttttagtccttgcaaatatagaatatttggttttggtccttggtattttgttttagtccttgtaaaat 18786119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 22394437 - 22394325
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| || ||| ||| ||||||||    
T  22394437 gttttagtccatgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaacttgatccctataatat 22394338  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  22394337 tcattttagtcct 22394325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 24491156 - 24491044
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | ||| |||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  24491156 gttttagtccctgcaaatatagaatatttggttttggtccttgatattttgttttagtccttgtaaaatcatttcatattgaaattggtccctataatat 24491057  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  24491056 tcattttagtcct 24491044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 29991212 - 29991284
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  29991212 ttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatattcattttagtcct 29991284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 36267 - 36195
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   ||||||||||||||| ||||||||||||  |||||| ||||    
T  36267 ttggtattttgttttaatccttgtaaaatcatttcatattaaaattggtccttataatattcattttagtcct 36195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 18963679 - 18963777
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataata 169  Q
    |||||||||||||| |||||| || |||| |||| || ||||| |||||||||||| || |||||||||   |||||||| |||||| ||| |||||||    
T  18963679 gttttagtccttgcaaatatagaatatttggttttggtcattgttattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataata 18963777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 14602079 - 14602192
Alignment:
Q  71 agttttagtccttgccaatataaaacattttgtttgga-cattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataata 169  Q
    ||||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| |||||||    
T  14602079 agttttagtccctgcaaatatagaatatttggttttgatccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataata 14602178  T
Q  170 tatattttactcct 183  Q
    |  |||||| ||||    
T  14602179 ttcattttagtcct 14602192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 28031717 - 28031829
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | ||| |||||||||||| || |||||||||   |||||||| |||||| ||||||||||||    
T  28031717 gttttagtccctgcaaatatataatatttggttttggtccttgatattttgttttaatccttgtaaaatcatttcatattgaaattggtccttataatat 28031816  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  28031817 tcattttagtcct 28031829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 37172561 - 37172449
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||||| |||| ||| ||||||||    
T  37172561 gttttagtccctgcgaatatagaatatttggttttggtctttggtattttgttttaatcattgtaaaatcatttcatattaatattggtccctataatat 37172462  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  37172461 tcattttagtcct 37172449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 39288427 - 39288355
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| ||||||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  39288427 ttggtattttgttttaatctttgtaaaatcatttcatattgaaattggtccctataatattcattttagtcct 39288355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 20062111 - 20062012
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  20062111 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 20062012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 33626 - 33739
Alignment:
Q  71 agttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataata 169  Q
    ||||||||||  ||| ||||||||| |||| |||| || | |||||||||||||||| || |||||||||   |||||||| ||| || ||| |||||||    
T  33626 agttttagtctctgcaaatataaaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaaatggtccctataata 33725  T
Q  170 tatattttactcct 183  Q
    |  |||||| ||||    
T  33726 ttcattttagtcct 33739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 10913844 - 10913956
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || ||||| |||||||||||| || |||||||||   |||||||| | |||| ||| ||||||||    
T  10913844 gttttagtccctgcaaatatagaatatttggttttggtcattgatattttgttttaatccttgtaaaatcatttcatattgagattggtccctataatat 10913943  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  10913944 tcattttagtcct 10913956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 20061868 - 20061936
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||| ||| ||||||||| ||||  ||| || | ||||||||||||||||||| |||||||||    
T  20061868 gttttagtccctgcaaatataaaaaatttgattttggtccttggtattttgttttactccttgtaaaat 20061936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 39288224 - 39288303
Alignment:
Q  73 ttttagtccttgccaatataaaacattttg--tttggacattggtattttgttttactctttgtaaaatatgttcatatt 150  Q
    ||||||||  ||| ||||||||| ||||||  ||||| | |||||||||||||||| || ||||||||||  ||||||||    
T  39288224 ttttagtcactgcaaatataaaaaattttggttttggtccttggtattttgttttagtccttgtaaaatagattcatatt 39288303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 42154820 - 42154932
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| ||| || ||| ||||||||    
T  42154820 gttttagtccctgcaaatatagaatatttagttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaactggtccctataatat 42154919  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  42154920 tcattttagtcct 42154932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 50096203 - 50096315
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgtttgga-cattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   || ||||| |||||| ||| ||||||||    
T  50096203 gttttagtccctgcaaatatagaatatttggttttgatccttggtattttgttttaatccttgtaaaatcattttatattgaaattggtccctataatat 50096302  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  50096303 tcattttagtcct 50096315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 50624836 - 50624948
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| | ||||||    
T  50624836 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctgtaatat 50624935  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  50624936 tcattttagtcct 50624948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 16056418 - 16056531
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || ||||| |||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  16056418 gttttagtccctgcaaatatagaatatttggttttggtcattgatattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 16056517  T
Q  171 atattttactcctt 184  Q
      |||||| |||||    
T  16056518 tcattttagtcctt 16056531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 29838607 - 29838495
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||||||| || ||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  29838607 gttttagtccttgcaaaaatagaatatttagttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 29838508  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  29838507 tcattttagtcct 29838495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 32315649 - 32315577
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| ||||||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  32315649 ttggtattttgttttaatctttgtaaaatcatttcatattgaaattggtccctataatattcattttagtcct 32315577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 49499913 - 49500025
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  49499913 gttttagtccctgcaaatatataatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 49500012  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  49500013 tcattttagtcct 49500025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 49500156 - 49500088
Alignment:
Q  72 gttttagtccttgccaatataaaacattttg-tttggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||||||| ||||||||| |||| | ||||| | |||||||||||||||| || |||||||||    
T  49500156 gttttagtccttgcaaatataaaaaatttggttttggtccttggtattttgttttaatccttgtaaaat 49500088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 52835615 - 52835727
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  52835615 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 52835714  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  52835715 tcattttagtcct 52835727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 27285282 - 27285183
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||||||  ||| |||| || ||||| |||||||||||| ||||||||||||   ||||||||  | ||| ||||||||||||    
T  27285282 gttttagtccctgcaaatataaaaagtttggttttggtcattgatattttgttttagtctttgtaaaattgattcatattggatttggtccttataatat 27285183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 49121786 - 49121885
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| ||||||||| |||| |||| || | ||| |||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  49121786 gttttagtccatgcaaatataaaatatttagttttggtccttgatattttgttttaatcattgtaaaattatttcatattgaaattggtccctataatat 49121885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 170
Target Start/End: Complemental strand, 14546150 - 14546050
Alignment:
Q  71 agttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataata 169  Q
    ||||||||||| ||| |||||| || |||| |||| || | || ||||||||||||| || |||||||||   |||||||| |||||| ||| |||||||    
T  14546150 agttttagtccctgcaaatatagaatatttggttttggtcctttgtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataata 14546051  T
Q  170 t 170  Q
    |    
T  14546050 t 14546050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 26582885 - 26582813
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  26582885 ttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatattcattttagtcct 26582813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 27934561 - 27934633
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  27934561 ttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatattcattttagtcct 27934633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 33162633 - 33162521
Alignment:
Q  72 gttttagtccttgccaatataaaacattttg-tttggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||||||| |||||| || |||| | ||||| | ||| |||||||| ||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  33162633 gttttagtccttgcaaatatagaatatttggttttggtccttgatattttgtgttaatccttgtaaaatcatttcatattgaaattggtccgtataatat 33162534  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  33162533 tcattttagtcct 33162521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 38807608 - 38807720
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||| | || |||||||||   |||||||| |||||| ||| ||||||||    
T  38807608 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgtttcaatccttgtaaaatcatttcatattgaaattggtccctataatat 38807707  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  38807708 tcattttagtcct 38807720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 46962855 - 46962783
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  46962855 ttggtattttgttttaatccttgtaaaatcatttcatattgaaattgatccctataatattcattttagtcct 46962783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 50645542 - 50645654
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgtttgga-cattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||||||| || ||| || |||| |||| || | || ||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  50645542 gttttagtccttgcaaaaatagaatatttggttttgatccttagtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 50645641  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  50645642 tcattttagtcct 50645654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 8855 - 8743
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgtttgga-cattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| ||||||||||||   |||||||| |||||| ||| || |||||    
T  8855 gttttagtccctgcaaatatagaatatttggttttgatccttggtattttgttttaatctttgtaaaatcatttcatattgaaattggtccctaaaatat 8756  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  8755 tcattttaatcct 8743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 8612 - 8680
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||| ||| ||||||||| |||| |||| || | |||||||||||||||| || |||||||||    
T  8612 gttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttttagtccttgtaaaat 8680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 4700 - 4588
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  4700 gttttagtccctgcaaatatataatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 4601  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  4600 tcattttagtcct 4588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 3484854 - 3484966
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  3484854 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatcattgtaaaatcatttcatattgaaattggtccctataatat 3484953  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  3484954 tcattttagtcct 3484966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 29819456 - 29819568
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  29819456 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 29819555  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  29819556 tcattttagtcct 29819568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 30609179 - 30609067
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  30609179 gttttagtccatgcaaatatataatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 30609080  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  30609079 tcattttagtcct 30609067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 31717245 - 31717357
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  31717245 gttttagtccatgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccatataatat 31717344  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  31717345 tcattttagtcct 31717357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 19661419 - 19661518
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| ||||||||| ||||  ||| || | |||||||||||||||| ||||||||||||   |||||||| || ||| ||||| ||||||    
T  19661419 gttttagtccctgcaaatataaaaaatttgattttggtccttggtattttgttttagtctttgtaaaattgattcatattgaatttggtccttgtaatat 19661518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 33783710 - 33783611
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  33783710 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 33783611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 3345090 - 3345158
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||| ||| ||||||||| |||| |||| || | ||||||||||||||||||  |||||||||    
T  3345090 gttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttttacttcttgtaaaat 3345158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 8926297 - 8926369
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  8926297 ttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatattcattttagtcct 8926369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 8936554 - 8936626
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  8936554 ttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatattcattttagtcct 8936626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 28853555 - 28853667
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || || ||||||   |||||||| |||||| ||| ||||||||    
T  28853555 gttttagtccctgcaaatatagaatatttagttttggtccttggtattttgttttaatccttctaaaatcatttcatattgaaattggtccatataatat 28853654  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  28853655 tcattttagtcct 28853667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 30608936 - 30609004
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||| ||| ||||||||| |||| |||| || | |||||||||||||||| || |||||||||    
T  30608936 gttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttttagtccttgtaaaat 30609004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 2184707 - 2184595
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  2184707 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccatataatat 2184608  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  2184607 tcattttagtcct 2184595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 5721022 - 5721134
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  5721022 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 5721121  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  5721122 tcattttagtcct 5721134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 37815411 - 37815523
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  37815411 gttttagtccatgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 37815510  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  37815511 tcattttagtcct 37815523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 11021744 - 11021855
Alignment:
Q  73 ttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatata 171  Q
    |||| |||| ||| ||||||||| |||| |||| || | |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||     
T  11021744 ttttggtccctgcaaatataaaatatttggttttggtccttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatatt 11021843  T
Q  172 tattttactcct 183  Q
     |||||| ||||    
T  11021844 cattttagtcct 11021855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 26314546 - 26314611
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgtttggacattggtattttgttttactctttgtaaa 137  Q
    |||||||||| ||| ||||||||| ||| | ||||| | |||||||||||||||| || |||||||    
T  26314546 gttttagtccctgcaaatataaaaaattgtttttggtccttggtattttgttttagtccttgtaaa 26314611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 989348 - 989276
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  989348 ttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatattcattttagtcct 989276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 4712491 - 4712423
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||| ||| ||||||||| |||| |||| || | |||||||||||||||| || |||||||||    
T  4712491 gttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttttaatccttgtaaaat 4712423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 16960077 - 16959965
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgtttgga-cattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||||||| || ||| || |||| |||| || | || ||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  16960077 gttttagtccttgcaaaaatagaatatttggttttgatccttagtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatat 16959978  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  16959977 tcattttagtcct 16959965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 17107502 - 17107614
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | |||||||||||||||| || ||||| |||   |||||||| |||||| ||| ||||||||    
T  17107502 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtacaatcatttcatattgaaattggtccctataatat 17107601  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  17107602 tcattttagtcct 17107614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 17865289 - 17865221
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||| ||| ||||||||| |||| |||| || | |||||||||||||||| || |||||||||    
T  17865289 gttttagtccctgcaaatataaaaaatttggttttggtctttggtattttgttttaatccttgtaaaat 17865221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 22487330 - 22487402
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  22487330 ttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatattcattttagtcct 22487402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 22487533 - 22487465
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||||||| ||||| ||| |||| |||| || | |||||||||||||||| || |||||||||    
T  22487533 gttttagtccttgcaaatatgaaaaatttggttttggtccttggtattttgttttagtccttgtaaaat 22487465  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 43750017 - 43750129
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatat 170  Q
    |||||||||| ||| |||||| || |||| |||| || | ||||||||||| |||| || |||||||||   |||||||| |||||| ||| ||||||||    
T  43750017 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgctttaatccttgtaaaatcatttcatattgaaattggtccctataatat 43750116  T
Q  171 atattttactcct 183  Q
      |||||| ||||    
T  43750117 tcattttagtcct 43750129  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 46081647 - 46081575
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  46081647 ttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatattcattttagtcct 46081575  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 46481027 - 46481099
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  46481027 ttggtattttgttttaatcattgtaaaatcatttcatattgaaattggtccctataatattcattttagtcct 46481099  T

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Target: scaffold0817 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0817
Description:

Target: scaffold0817; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 4093 - 4165
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  4093 ttggtattttgttttaatccttgtaaaatcatttcatattgaaattggtccctataatattcattttagtcct 4165  T

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Target: scaffold0817; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 4295 - 4227
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||| ||| ||||||||| |||| |||| || | |||||||||||||||| || |||||||||    
T  4295 gttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttttagtccttgtaaaat 4227  T

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Target: scaffold0137 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 36835 - 36903
Alignment:
Q  72 gttttagtccttgccaatataaaacattttgttt-ggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||| ||| ||||||||| |||| |||| || | |||||||||||||||| || |||||||||    
T  36835 gttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttttagtccttgtaaaat 36903  T

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Target: scaffold0137; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 37038 - 36966
Alignment:
Q  111 ttggtattttgttttactctttgtaaaatatgttcatattaaaattgttccttataatatatattttactcct 183  Q
    |||||||||||||||| || |||||||||   |||||||| |||||| ||| ||||||||  |||||| ||||    
T  37038 ttggtattttgttttaatccttgtaaaattatttcatattgaaattggtccctataatattcattttagtcct 36966  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 74227 - 74159
Alignment:
Q  72 gttttagtccttgccaatataaaacattttg-tttggacattggtattttgttttactctttgtaaaat 139  Q
    |||||||||| ||| ||||||||| |||| | ||||| | |||||||||||||||| || |||||||||    
T  74227 gttttagtccctgcaaatataaaaaatttggctttggtccttggtattttgttttagtccttgtaaaat 74159  T

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