View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7457_low_25 (Length: 242)

Name: NF7457_low_25
Description: NF7457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7457_low_25
NF7457_low_25
[»] chr1 (2 HSPs)
chr1 (1-183)||(48915655-48915837)
chr1 (93-129)||(7213382-7213418)
[»] chr4 (2 HSPs)
chr4 (91-183)||(9279698-9279790)
chr4 (91-183)||(30542277-30542369)
[»] chr7 (1 HSPs)
chr7 (86-183)||(12837305-12837402)
[»] chr5 (3 HSPs)
chr5 (91-183)||(21610153-21610245)
chr5 (115-183)||(32274369-32274437)
chr5 (102-138)||(24147379-24147414)
[»] chr3 (4 HSPs)
chr3 (85-174)||(53101248-53101337)
chr3 (91-124)||(4116410-4116443)
chr3 (102-137)||(25543231-25543266)
chr3 (92-136)||(54449913-54449957)
[»] chr2 (1 HSPs)
chr2 (91-181)||(45305544-45305632)
[»] chr6 (1 HSPs)
chr6 (92-137)||(1303359-1303404)
[»] chr8 (1 HSPs)
chr8 (106-183)||(18340433-18340510)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 48915655 - 48915837
Alignment:
Q  1 gtccactcaagatttgctcaaacacatgcttattgtatgaaagacatgcataaataagaacttttcaaagctttgattcttttgatggaacaactcttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48915655 gtccactcaagatttgctcaaacacatgcttattgtatgaaagacatgcataaataagaacttttcaaagctttgattcttttgatggaacaactcttct 48915754  T
Q  101 atggacacaaacctaaatgaaaaatatttggacacacattcaaaattagaaaaatttaatagagaaataaattagtcacatca 183  Q
    ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  48915755 atggacacaaacctaaatgaaaaatatttgggcacacactcacaattagaaaaatttaatagagaaataaattagtcacatca 48915837  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 7213418 - 7213382
Alignment:
Q  93 actcttctatggacacaaacctaaatgaaaaatattt 129  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  7213418 actcttctatagacacaatcctaaatgaaaaatattt 7213382  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 9279790 - 9279698
Alignment:
Q  91 caactcttctatggacacaaacctaaatgaaaaatatttggacacacattcaaaattagaaaaatttaatagagaaataaattagtcacatca 183  Q
    ||||| |||||| ||||||||||||| |||||||||||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||||    
T  9279790 caacttttctatagacacaaacctaactgaaaaatatttgggcacgcactcacaattagaaaaatttaatagagaaataaattagtcacatca 9279698  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 30542369 - 30542277
Alignment:
Q  91 caactcttctatggacacaaacctaaatgaaaaatatttggacacacattcaaaattagaaaaatttaatagagaaataaattagtcacatca 183  Q
    ||||||||||||  ||||||||| |||||||||| ||||   |||||| ||| ||||| ||||||||||||||||||||||||||||||||||    
T  30542369 caactcttctatacacacaaacccaaatgaaaaacatttaagcacacactcacaattaaaaaaatttaatagagaaataaattagtcacatca 30542277  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 12837305 - 12837402
Alignment:
Q  86 tggaacaactcttctatggacacaaacctaaatgaaaaatatttggacacacattcaaaattagaaaaatttaatagagaaataaattagtcacatca 183  Q
    |||| ||||||||||||  ||||||||| ||||||||||||||| | |||||| ||| ||||| ||||||||||||||||||||||||||||||||||    
T  12837305 tggagcaactcttctatacacacaaacccaaatgaaaaatatttcggcacacactcacaattaaaaaaatttaatagagaaataaattagtcacatca 12837402  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 21610245 - 21610153
Alignment:
Q  91 caactcttctatggacacaaacctaaatgaaaaatatttggacacacattcaaaattagaaaaatttaatagagaaataaattagtcacatca 183  Q
    ||||||||||||  ||||||||| |||||||||| |||||| |||||| ||| ||||| ||||||||||||||||||||||||| ||||||||    
T  21610245 caactcttctatacacacaaacccaaatgaaaaacatttgggcacacactcataattaaaaaaatttaatagagaaataaattaatcacatca 21610153  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 32274437 - 32274369
Alignment:
Q  115 aaatgaaaaatatttggacacacattcaaaattagaaaaatttaatagagaaataaattagtcacatca 183  Q
    |||| |||||||||||||||||||| || || | |||| | |||| ||| |||||||||||||||||||    
T  32274437 aaatcaaaaatatttggacacacatacataaattgaaagaattaagagaaaaataaattagtcacatca 32274369  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 24147414 - 24147379
Alignment:
Q  102 tggacacaaacctaaatgaaaaatatttggacacaca 138  Q
    ||||||||||||||||| |||||||||||||||||||    
T  24147414 tggacacaaacctaaat-aaaaatatttggacacaca 24147379  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 53101248 - 53101337
Alignment:
Q  85 atggaacaactcttctatggacacaaacctaaatgaaaaatatttggacacacattcaaaattagaaaaatttaatagagaaataaatta 174  Q
    ||||| ||||||||| ||||||||||| | |||||||||| ||||||| ||||| ||| |||||||||||||||||||| ||||||||||    
T  53101248 atggagcaactcttccatggacacaaatccaaatgaaaaacatttggagacacactcacaattagaaaaatttaatagaaaaataaatta 53101337  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 4116443 - 4116410
Alignment:
Q  91 caactcttctatggacacaaacctaaatgaaaaa 124  Q
    ||||||||||||||||||||||||||||||||||    
T  4116443 caactcttctatggacacaaacctaaatgaaaaa 4116410  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 25543231 - 25543266
Alignment:
Q  102 tggacacaaacctaaatgaaaaatatttggacacac 137  Q
    ||||||||||||||||| ||||||||||||||||||    
T  25543231 tggacacaaacctaaataaaaaatatttggacacac 25543266  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 54449957 - 54449913
Alignment:
Q  92 aactcttctatggacacaaacctaaatgaaaaatatttggacaca 136  Q
    ||||||||||||||||||| | ||||||| |||||||||| ||||    
T  54449957 aactcttctatggacacaatcgtaaatgataaatatttgggcaca 54449913  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 45305544 - 45305632
Alignment:
Q  91 caactcttctatggacacaaacctaaatgaaaaatatttggacacacattcaaaattagaaaaatttaatagagaaataaattagtcacat 181  Q
    ||||||||||||||| |||  |||||||||||||||||||| | ||||  || ||||||||||  |||| |||||||||||||| ||||||    
T  45305544 caactcttctatggatacacccctaaatgaaaaatatttgggcgcaca--cacaattagaaaacattaaaagagaaataaattaatcacat 45305632  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 1303359 - 1303404
Alignment:
Q  92 aactcttctatggacacaaacctaaatgaaaaatatttggacacac 137  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  1303359 aactcttctatggacacaatcctaaatgaaaaatatttgaacacac 1303404  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 18340433 - 18340510
Alignment:
Q  106 cacaaacctaaatgaaaaatatttggacacacattcaaaattagaaaaatttaatagagaaataaattagtcacatca 183  Q
    ||||||||||||| ||||||||||| |||||||| || || | || | | |||| ||| |||||||||| ||||||||    
T  18340433 cacaaacctaaattaaaaatatttgaacacacatacataaatggagagaattaaaagaaaaataaattaatcacatca 18340510  T

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