View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7457_low_27 (Length: 229)

Name: NF7457_low_27
Description: NF7457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7457_low_27
NF7457_low_27
[»] chr1 (2 HSPs)
chr1 (7-229)||(28859519-28859741)
chr1 (31-229)||(28861598-28861800)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 28859741 - 28859519
Alignment:
Q  7 tatatcatattaaaaagggagtaaaagccaagaaaagaaacttataaataggataaatgaaaataacatatagagatgcttaacggtgcaccttatatct 106  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28859741 tatatcatattgaaaagggagtaaaagtcaagaaaagaaacttataaataggataaatgaaaataacatttagagatgcttaacggtgcaccttatatct 28859642  T
Q  107 tacattttgtgcaaagaatgaaaataaacttttcaagacatgaacattttcaaggattgaccactgaacattgtcaagccatgtacaacaagtaataaaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  28859641 tacattttgtgcaaagaatgaaaataaacttttcaagacatgaacattttcaagcattgaccactgaacattgtcaaggcatgtacaacaagtaataaaa 28859542  T
Q  207 ataaccttatgataatacataaa 229  Q
    ||||| |||||||||||||||||    
T  28859541 ataacattatgataatacataaa 28859519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 31 - 229
Target Start/End: Complemental strand, 28861800 - 28861598
Alignment:
Q  31 aagccaagaaaagaaacttataaataggataaatgaaaataa-catatagagatgcttaacggtgcaccttatatcttacattttgtgcaaagaatgaaa 129  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||  | ||||||||||||||  |||  ||   |||||||||    
T  28861800 aagccaagaaaagaaacttataaataggataaatgaaattaaacatatagagatgcttaacattacaccttatatcttatgtttgatgtggagaatgaaa 28861701  T
Q  130 ataaacttttcaa---gacatgaacattttcaaggattgaccactgaacattgtcaagccatgtacaacaagtaataaaaataaccttatgataatacat 226  Q
    |||||||||||||   ||||||||||||||||||||| ||||| |||||||| ||||  ||||||||| |||||||||||||||| | || |||||||||    
T  28861700 ataaacttttcaacaagacatgaacattttcaaggatcgaccattgaacattttcaaagcatgtacaagaagtaataaaaataacatcatcataatacat 28861601  T
Q  227 aaa 229  Q
    |||    
T  28861600 aaa 28861598  T

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