View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7457_low_29 (Length: 226)
Name: NF7457_low_29
Description: NF7457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7457_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 33397228 - 33397017
Alignment:
| Q |
1 |
ataagtcttatatatatgttttaattttaatgtcaatcatatctaaccaaaacaaaaaa-gagcaacattagtacttctcataaagtgaattgatcaagc |
99 |
Q |
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| T |
33397228 |
ataagtcttatatatatgttctaattttaatgtcaatcatatctaaccaaaacaaaaaaagagcaacattcgtacttctcataaagtgaattgatcaagc |
33397129 |
T |
|
| Q |
100 |
aatattatggctctttctcgtgtgctttttctctttgctctcattgctactatcttttcaaccatcgctgtggcaaaagattttgtagttggagatgaac |
199 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33397128 |
aatattatggctctttctcgtgttctttttctctttgctctcattgctactatcttttcaaccatggctgtggcaaaagattttgtagttggagatgaac |
33397029 |
T |
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| Q |
200 |
gtggttggaaat |
211 |
Q |
| |
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|||||||||||| |
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| T |
33397028 |
gtggttggaaat |
33397017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 208
Target Start/End: Complemental strand, 33400313 - 33400105
Alignment:
| Q |
3 |
aagtcttatatatatgttttaattttaatgtcaatcatatctaa------ccaaaacaaaaaagagcaacattagtacttctcataaagtgaattgatca |
96 |
Q |
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|||||||||||||||||| | ||| |||||||||||||||||| |||||||||| | |||||| || || ||| ||| ||||||||||||| |
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| T |
33400313 |
aagtcttatatatatgttctgttttcaatgtcaatcatatctaagtctaaccaaaacaaaga-gagcaatcttggtgctta--atacagtgaattgatca |
33400217 |
T |
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| Q |
97 |
agcaatattatggctctttctcgtgtgctttttctctttgctctcattgctactatcttttcaaccatcgctgtggcaaaagattttgtagttggagatg |
196 |
Q |
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| T |
33400216 |
aaatatattatggctctttctcgttctcttttcctctttgctctcattgctactatcttctcaaccatggctgtggcaaaagattttgtagttggagatg |
33400117 |
T |
|
| Q |
197 |
aacgtggttgga |
208 |
Q |
| |
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|| ||||||||| |
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| T |
33400116 |
aaagtggttgga |
33400105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 33442423 - 33442330
Alignment:
| Q |
105 |
tatggctctttctcgtgtgctttttctctttgctctcattgctactatcttttcaaccatcgctgtggcaaaagattttgtagttggagatgaa |
198 |
Q |
| |
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||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||| |
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| T |
33442423 |
tatggctctttctcgtgctcttttcctctttgctttcattgctactatcttctcaaccatggctgtggcaaaagattttgtagttggtgatgaa |
33442330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 33452672 - 33452580
Alignment:
| Q |
106 |
atggctctttctcgtgtgctttttctctttgctctcattgctactatcttttcaaccatcgctgtggcaaaagattttgtagttggagatgaa |
198 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| | ||||| |||||||| || |||||||||||||||||||||||||||||| |
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| T |
33452672 |
atggctctttctcgtgctctttttctctttgctctcattgcttccatcttctcaaccatggccgtggcaaaagattttgtagttggagatgaa |
33452580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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