View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7457_low_3 (Length: 666)

Name: NF7457_low_3
Description: NF7457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7457_low_3
NF7457_low_3
[»] chr4 (1 HSPs)
chr4 (1-649)||(38877329-38877977)
[»] chr8 (23 HSPs)
chr8 (116-564)||(16616938-16617415)
chr8 (415-624)||(16792900-16793109)
chr8 (126-248)||(16628648-16628770)
chr8 (126-248)||(16637529-16637651)
chr8 (413-574)||(16790986-16791147)
chr8 (9-108)||(16790169-16790268)
chr8 (9-108)||(16791575-16791674)
chr8 (9-118)||(16616807-16616916)
chr8 (407-564)||(16629582-16629739)
chr8 (407-564)||(16638463-16638620)
chr8 (9-118)||(16628507-16628616)
chr8 (9-118)||(16637388-16637497)
chr8 (134-251)||(16790682-16790799)
chr8 (134-251)||(16792594-16792711)
chr8 (3-117)||(16792440-16792554)
chr8 (407-526)||(16628965-16629085)
chr8 (407-526)||(16637846-16637966)
chr8 (3-117)||(16790527-16790642)
chr8 (437-511)||(16629304-16629378)
chr8 (437-511)||(16638185-16638259)
chr8 (413-455)||(15110407-15110449)
chr8 (125-196)||(16791464-16791534)
chr8 (125-191)||(16790062-16790128)


Alignment Details
Target: chr4 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 1 - 649
Target Start/End: Original strand, 38877329 - 38877977
Alignment:
Q  1 ttaatgtgaatagttcaaaacagcatataaaatcattcacctttttatcatatgtcaagtgagatacaaggtcctgattcatagtcactgcactgtacat 100  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38877329 ttaatgtgaatagttcaaaacagaatataaaaccattcacctttttatcatatgtcaagtgagatacaaggtcctgattcatagtcactgcattgtacat 38877428  T
Q  101 gattttaagaagtaatccaactgtactttcaacattttcctgttcagcgataaccaccttaaagtcgaacaattgattgtttatgtcttttatttctgct 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  38877429 gattttaagaagtaatccaactgcactttcaacattttcctgttcagcgataaccacctcacagtcgaacaattgattgtttatgtcttttatttctgct 38877528  T
Q  201 aaaatgttctgatttttctgctagagttaacaacgtgtcagtaaaattcttgtaacaagataacggtatactcttctagtagatttgaatggcaagnnnn 300  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |        
T  38877529 aaaatgttctgatttttctgctagagttaacaatgtgtcagtaaaattcttgtaacaagataacggtatactcttctagtagatttgaatggtaggaaga 38877628  T
Q  301 nnnnntaagattaccacagtttgagggcattttcctttcattgtggatgaattcaagtcagcttctgcagagtcagcgaactgattgaaagcatcatgca 400  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38877629 aaaaaaaagattaccacagtttgagggcattttcctttcattgtggatgaattcaagtcagcttctgcagagtcagcgaactgattgaaagcatcatgca 38877728  T
Q  401 tgggaatatcataggtggttgcaacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38877729 tgggaatatcataggtggttgcaacaaagctgtgaggcattttccatgctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaa 38877828  T
Q  501 tatgaaatgtaaattaaacactttagtgacaggtccacaccttcgggaatagtaaaggttggtagtcctagttcatcaaccatcactggcatttgattta 600  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38877829 tgtcaaatgtaaattaaacactttagtgacaggtccacaccttcgggaatagtaaaggttggtagtcctagttcatcaaccatctctggcatttgattta 38877928  T
Q  601 acaattctgcccctggaatttcatcattcaaacggaccacctctttaat 649  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38877929 acaattctgcccctggaatttcatcattcaaacggaccacctctttaat 38877977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 2e-54; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 116 - 564
Target Start/End: Original strand, 16616938 - 16617415
Alignment:
Q  116 tccaactgtactttcaacattttcctgttcagcgataaccaccttaaagtcgaacaattgattgtttatgtcttttatttctgctaaaatgttctgattt 215  Q
    |||||||  |||||||||| |||||| || |||||||||||||| |  |||||||||| ||||||| ||||||||||||||||||||||| |||||||||    
T  16616938 tccaactacactttcaacaatttcctttttagcgataaccacctcactgtcgaacaatcgattgttaatgtcttttatttctgctaaaatattctgattt 16617037  T
Q  216 ttctgctagagttaacaacgtgtcagtaaaattcttgtaacaag----------ataacggtatactcttctagtagatttgaatgg----caagnnnnn 301  Q
    | |||||| ||||||||| ||| ||||||||||||||||| |||          |||| |||||||||||||||||||||| |||||     ||          
T  16617038 tcctgctacagttaacaatgtgacagtaaaattcttgtaagaagtgagaaaaaaataatggtatactcttctagtagatttcaatggtagaaaaaaagga 16617137  T
Q  302 nnnntaagattaccacagtttgagggcattttcctttcattgtggatgaattcaagtcagcttctgcagagtcagcgaactgattgaaagcatcatgcat 401  Q
         ||||||||||||| | ||||||||||||||||||||||| |||||| |   |||| | | |||  ||||| ||||||||||||| | |||   ||    
T  16617138 ggaggaagattaccacagctggagggcattttcctttcattgtgaatgaatccggttcaggtgccgcaacgtcagtgaactgattgaaaccttcacctat 16617237  T
Q  402 g---------------ggaatatcataggtggttgcaacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctga 486  Q
    |               ||| ||||| |||||||||||||||||||| |||||||||||||||||||||||  |||||||| ||||||| |||||||||||    
T  16617238 gctagcacaaacgccaggagtatcaaaggtggttgcaacaaagctgcgaggcattttccatcctgtgggaacaaatcattgcaagtcataatcttgctga 16617337  T
Q  487 tgaacatgcatcaatatgaaatgtaaattaaacactttagtgacaggtccacaccttcgggaatagtaaaggttggta 564  Q
    |||| || ||||||||| |||||||| | |||||||| ||||    | || ||||||| ||| |||||||||||||||    
T  16617338 tgaaaatacatcaatatcaaatgtaattgaaacacttcagtggtgagaccccaccttccggactagtaaaggttggta 16617415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 415 - 624
Target Start/End: Original strand, 16792900 - 16793109
Alignment:
Q  415 gtggttgcaacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaaatgtaaat 514  Q
    |||||||||| ||||||| ||||| |||||||||||||||||  |||| ||| ||||||||||||||||| ||||||||||||||||||  ||||||| |    
T  16792900 gtggttgcaaaaaagctgcgaggctttttccatcctgtgggaacaaataattgcaagtcagaatcttgctcatgaacatgcatcaatattcaatgtaatt 16792999  T
Q  515 taaacactttagtgacaggtccacaccttcgggaatagtaaaggttggtagtcctagttcatcaaccatcactggcatttgatttaacaattctgcccct 614  Q
    |||| ||||||||| || | |  | |||||| ||| | ||||||| |||| ||||| ||||  ||| ||| |||||||||||| |||||||| | || ||    
T  16793000 taaatactttagtggcaagacttcgccttcgagaacaataaaggtcggtaatcctacttcacgaacaatctctggcatttgatataacaatttttcctct 16793099  T
Q  615 ggaatttcat 624  Q
    || |||||||    
T  16793100 ggtatttcat 16793109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 126 - 248
Target Start/End: Original strand, 16628648 - 16628770
Alignment:
Q  126 ctttcaacattttcctgttcagcgataaccaccttaaagtcgaacaattgattgtttatgtcttttatttctgctaaaatgttctgatttttctgctaga 225  Q
    |||||||||||||||| |||| |||||||||||| | |||| |||||| |||| |||||||||||||||||||||||||  |||||| ||| ||||||||    
T  16628648 ctttcaacattttccttttcaccgataaccacctcacagtcaaacaatcgattatttatgtcttttatttctgctaaaacattctgaatttcctgctaga 16628747  T
Q  226 gttaacaacgtgtcagtaaaatt 248  Q
    || ||||| ||| || |||||||    
T  16628748 gtcaacaatgtgacaataaaatt 16628770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 126 - 248
Target Start/End: Original strand, 16637529 - 16637651
Alignment:
Q  126 ctttcaacattttcctgttcagcgataaccaccttaaagtcgaacaattgattgtttatgtcttttatttctgctaaaatgttctgatttttctgctaga 225  Q
    |||||||||||||||| |||| |||||||||||| | |||| |||||| |||| |||||||||||||||||||||||||  |||||| ||| ||||||||    
T  16637529 ctttcaacattttccttttcaccgataaccacctcacagtcaaacaatcgattatttatgtcttttatttctgctaaaacattctgaatttcctgctaga 16637628  T
Q  226 gttaacaacgtgtcagtaaaatt 248  Q
    || ||||| ||| || |||||||    
T  16637629 gtcaacaatgtgacaataaaatt 16637651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 413 - 574
Target Start/End: Original strand, 16790986 - 16791147
Alignment:
Q  413 aggtggttgcaacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaaatgtaa 512  Q
    |||||||||||||||||||| ||||||||||| ||||||||| |  |||| ||| |||||||  |||||||| ||||| |||||||||||  ||||||||    
T  16790986 aggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataataaatgtaa 16791085  T
Q  513 attaaacactttagtgacaggtccacaccttcgggaatagtaaaggttggtagtcctagttc 574  Q
     ||||| ||||||||| || | |  |||||||  ||| | |||||||  |||||||||||||    
T  16791086 tttaaatactttagtggcaagacttcaccttcaagaacaataaaggtcagtagtcctagttc 16791147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 16790268 - 16790169
Alignment:
Q  9 aatagttcaaaacagcatataaaatcattcacctttttatcatatgtcaagtgagatacaaggtcctgattcatagtcactgcactgtacatgattttaa 108  Q
    ||||||| |||| || |||||||| |||| |||||||||||||| || |||||||||||||||| |||||  |||||||||||| |||||||||||||||    
T  16790268 aatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaaggttctgatcgatagtcactgcattgtacatgattttaa 16790169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 16791674 - 16791575
Alignment:
Q  9 aatagttcaaaacagcatataaaatcattcacctttttatcatatgtcaagtgagatacaaggtcctgattcatagtcactgcactgtacatgattttaa 108  Q
    ||||||| |||| || ||||||||||| | |||||||||||||| || |||||||||||| ||| |||||| |||||||||||| |||||||||||||||    
T  16791674 aatagttgaaaatagaatataaaatcacttacctttttatcataagtgaagtgagatacatggttctgattgatagtcactgcattgtacatgattttaa 16791575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 16616807 - 16616916
Alignment:
Q  9 aatagttcaaaacagcatataaaatcattcacctttttatcatatgtcaagtgagatacaaggtcctgattcatagtcactgcactgtacatgattttaa 108  Q
    |||| |||||||||| ||||||||||||| |||||||||||| | || ||||||||||||||||  ||||| |||| ||||||| ||||||| ||||| |    
T  16616807 aataattcaaaacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgcattgtacataattttca 16616906  T
Q  109 gaagtaatcc 118  Q
     |||||||||    
T  16616907 caagtaatcc 16616916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 407 - 564
Target Start/End: Original strand, 16629582 - 16629739
Alignment:
Q  407 tatcataggtggttgcaacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaa 506  Q
    ||||| ||||||||| | |||||  | || ||||||||||||||||||||  |||||||| ||||||| ||||| ||||||||| |||||||||||| ||    
T  16629582 tatcaaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaa 16629681  T
Q  507 atgtaaattaaacactttagtgacaggtccacaccttcgggaatagtaaaggttggta 564  Q
    || ||  | ||||||||||||| |  | |  ||||||||||| || ||||||||||||    
T  16629682 atttagttcaaacactttagtggcgagactccaccttcgggactaataaaggttggta 16629739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 407 - 564
Target Start/End: Original strand, 16638463 - 16638620
Alignment:
Q  407 tatcataggtggttgcaacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaa 506  Q
    ||||| ||||||||| | |||||  | || ||||||||||||||||||||  |||||||| ||||||| ||||| ||||||||| |||||||||||| ||    
T  16638463 tatcaaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaa 16638562  T
Q  507 atgtaaattaaacactttagtgacaggtccacaccttcgggaatagtaaaggttggta 564  Q
    || ||  | ||||||||||||| |  | |  ||||||||||| || ||||||||||||    
T  16638563 atttagttcaaacactttagtggcgagactccaccttcgggactaataaaggttggta 16638620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 16628507 - 16628616
Alignment:
Q  9 aatagttcaaaacagcatataaaatcattcacctttttatcatatgtcaagtgagatacaaggtcctgattcatagtcactgcactgtacatgattttaa 108  Q
    |||| ||| |||||| |||||||| |||| |||||||||||  | || ||||||||||||||||  ||||| || ||||||||| |||||||||||||||    
T  16628507 aataattccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttgattgatggtcactgcattgtacatgattttaa 16628606  T
Q  109 gaagtaatcc 118  Q
     |||||||||    
T  16628607 caagtaatcc 16628616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 16637388 - 16637497
Alignment:
Q  9 aatagttcaaaacagcatataaaatcattcacctttttatcatatgtcaagtgagatacaaggtcctgattcatagtcactgcactgtacatgattttaa 108  Q
    |||| ||| |||||| |||||||| |||| |||||||||||  | || ||||||||||||||||  ||||| || ||||||||| |||||||||||||||    
T  16637388 aataattccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttgattgatggtcactgcattgtacatgattttaa 16637487  T
Q  109 gaagtaatcc 118  Q
     |||||||||    
T  16637488 caagtaatcc 16637497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 134 - 251
Target Start/End: Original strand, 16790682 - 16790799
Alignment:
Q  134 attttcctgttcagcgataaccaccttaaagtcgaacaattgattgtttatgtcttttatttctgctaaaatgttctgatttttctgctagagttaacaa 233  Q
    |||||||  |||| |||||||||||| |  ||| ||||||||||||||||||||| |||||| ||||||||  ||||||||||  || ||||||||||||    
T  16790682 attttccctttcaacgataaccacctcattgtcaaacaattgattgtttatgtctattatttttgctaaaagattctgattttaatgatagagttaacaa 16790781  T
Q  234 cgtgtcagtaaaattctt 251  Q
     ||| ||| ||| |||||    
T  16790782 tgtgacaggaaagttctt 16790799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 134 - 251
Target Start/End: Original strand, 16792594 - 16792711
Alignment:
Q  134 attttcctgttcagcgataaccaccttaaagtcgaacaattgattgtttatgtcttttatttctgctaaaatgttctgatttttctgctagagttaacaa 233  Q
    |||||||| |||| |||||||||||| |  ||| ||||||||||||||||||||| |||| | ||||||||  ||||||||||  || ||||||||||||    
T  16792594 attttccttttcaacgataaccacctcattgtcaaacaattgattgtttatgtctattatatttgctaaaagattctgattttcatgttagagttaacaa 16792693  T
Q  234 cgtgtcagtaaaattctt 251  Q
     ||| || |||| |||||    
T  16792694 tgtgacattaaagttctt 16792711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 16792440 - 16792554
Alignment:
Q  3 aatgtgaatagttcaaaacagcatataaaatcattcacctttttatcatatgtcaagtgagatacaaggtcctgattcatagtcactgcactgtacatga 102  Q
    |||||||||| || ||||||  ||||||||||||| || ||||||||| |  | |||||||||||| ||   ||||| ||||||| |||| |||||||||    
T  16792440 aatgtgaataattgaaaacataatataaaatcatttacatttttatcagaaatgaagtgagatacatggctttgattgatagtcattgcaatgtacatga 16792539  T
Q  103 ttttaagaagtaatc 117  Q
    |||||| ||||||||    
T  16792540 ttttaacaagtaatc 16792554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 407 - 526
Target Start/End: Original strand, 16628965 - 16629085
Alignment:
Q  407 tatcataggtggttgcaacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatctt-gctgatgaacatgcatcaatatga 505  Q
    ||||| ||| ||||||| |||||  | || ||||||||||||||||||||  |||||||| ||||||| |||||| | ||||||| ||| |||||||| |    
T  16628965 tatcaaagggggttgcatcaaagacgcgacgcattttccatcctgtgggaacaaatcatttcaagtcataatcttagttgatgaaaatgaatcaatatca 16629064  T
Q  506 aatgtaaattaaacactttag 526  Q
    ||||||  | |||||||||||    
T  16629065 aatgtagttcaaacactttag 16629085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 407 - 526
Target Start/End: Original strand, 16637846 - 16637966
Alignment:
Q  407 tatcataggtggttgcaacaaagctgtgaggcattttccatcctgtgggagtaaatcattacaagtcagaatctt-gctgatgaacatgcatcaatatga 505  Q
    ||||| ||| ||||||| |||||  | || ||||||||||||||||||||  |||||||| ||||||| |||||| | ||||||| ||| |||||||| |    
T  16637846 tatcaaagggggttgcatcaaagacgcgacgcattttccatcctgtgggaacaaatcatttcaagtcataatcttagttgatgaaaatgaatcaatatca 16637945  T
Q  506 aatgtaaattaaacactttag 526  Q
    ||||||  | |||||||||||    
T  16637946 aatgtagttcaaacactttag 16637966  T

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Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 16790527 - 16790642
Alignment:
Q  3 aatgtgaatagttcaaaacagcatataaaatcattcaccttttt-atcatatgtcaagtgagatacaaggtcctgattcatagtcactgcactgtacatg 101  Q
    |||||||||||||||||| |  ||||||||||||| || ||||| |||| | || || ||||||||| ||   ||||| ||||||| |||| ||||||||    
T  16790527 aatgtgaatagttcaaaagataatataaaatcatttacattttttatcagaagtgaaatgagatacatggctttgattgatagtcattgcattgtacatg 16790626  T
Q  102 attttaagaagtaatc 117  Q
    ||||||| ||||||||    
T  16790627 attttaacaagtaatc 16790642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 437 - 511
Target Start/End: Original strand, 16629304 - 16629378
Alignment:
Q  437 gcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaaatgta 511  Q
    |||| |||||||||||||||  |||||||| ||||||| |||||||| || ||| |||||||||||| |||||||    
T  16629304 gcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaatatcaaatgta 16629378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 437 - 511
Target Start/End: Original strand, 16638185 - 16638259
Alignment:
Q  437 gcattttccatcctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatatgaaatgta 511  Q
    |||| |||||||||||||||  |||||||| ||||||| |||||||| || ||| |||||||||||| |||||||    
T  16638185 gcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaatatcaaatgta 16638259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 455
Target Start/End: Complemental strand, 15110449 - 15110407
Alignment:
Q  413 aggtggttgcaacaaagctgtgaggcattttccatcctgtggg 455  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  15110449 aggtggttgcaacaaagctgcgatgcattttccatcctgtggg 15110407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 16791534 - 16791464
Alignment:
Q  125 actttcaacattttcctgttcagcgataaccaccttaaagtcgaacaattgattgtttatgtcttttatttc 196  Q
    |||||||| |||||||| |||||||||||||| || | ||||| | ||| |||||||||||| |||||||||    
T  16791534 actttcaatattttccttttcagcgataaccatctcatagtcg-agaatcgattgtttatgttttttatttc 16791464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 16790128 - 16790062
Alignment:
Q  125 actttcaacattttcctgttcagcgataaccaccttaaagtcgaacaattgattgtttatgtctttt 191  Q
    ||||||||||||||||| |||||| ||||||| || | |||| |||||| ||| |||||||| ||||    
T  16790128 actttcaacattttccttttcagcaataaccatctcatagtcaaacaatcgatcgtttatgtttttt 16790062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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