View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7457_low_31 (Length: 211)
Name: NF7457_low_31
Description: NF7457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7457_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 39050353 - 39050533
Alignment:
| Q |
13 |
tttggtgttattccttcgattcataggaatattgggttttagtaattcgaagttctattgagaaataactaaagtctgataaaaaattatttcatctata |
112 |
Q |
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| T |
39050353 |
tttggtgttattccttcgattcataggaatattgggttttagtaattcgaagttctattgagaaataactaaagtccggtcaaaaattgtttcatctata |
39050452 |
T |
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| Q |
113 |
ttgtatttgaaattaggattaatgaagaaaagtaacttgacatctggtgaccgtaaatattaacaaaaagttgtatgtttg |
193 |
Q |
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| T |
39050453 |
ttgtgtttcaaattaggattaatgaagaaaagtaatttgacatctggtgactgtaaatattaacaaaaagttgtatgtttg |
39050533 |
T |
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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 1622434 - 1622486
Alignment:
| Q |
46 |
gggttttagtaattcgaagttctattgagaaataactaaagtctgataaaaaa |
98 |
Q |
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| T |
1622434 |
gggttttgataattcgaagttcgatcgaaaaataactaaattctgataaaaaa |
1622486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 5550621 - 5550670
Alignment:
| Q |
55 |
taattcgaagttctattgagaaataactaaagtctgataaaaaattattt |
104 |
Q |
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| T |
5550621 |
taatccgaagttcgattgagaggtaagtaaagtctgataaaaaattattt |
5550670 |
T |
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