View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7457_low_4 (Length: 559)
Name: NF7457_low_4
Description: NF7457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7457_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Complemental strand, 13946411 - 13945954
Alignment:
| Q |
19 |
aagcttttgggtcttgactgaaccaagattttaggtccttaatatagtctaactaagcttttggatcgagaccgtagtctaacgaagatttcaataataa |
118 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13946411 |
aagcttttgggtcttgactgaaccaagaatttaggtccttaatatagtctaactaagcttttggatcgagaccgtagtctaaccaagatttcaataataa |
13946312 |
T |
|
| Q |
119 |
tcctcatcgagattcagatgaatgatcaaccatgcacccattgaacgacatggactaacacattccattgagatagtaggagaggcaggcttttcagtct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13946311 |
tcctcatcgagattcagatgaatgatcaaccatgcacccattgaacgacatggactaacacattccattgagatagtaggagaggcaggcttttcagtct |
13946212 |
T |
|
| Q |
219 |
tt--gggtgagtttcatatgtctcacatttttgcaagtgaaggacttaacaagat---------ttcatcaaatagagg-acgttgaaacgctcgaaata |
306 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
13946211 |
tttggggtgagtttcatatgtctcacatttttgcaagtgaaggacttgacaagatttcatcatcttcatcaaatagaggaacgttgaaacgctcgaaata |
13946112 |
T |
|
| Q |
307 |
ttttgtgagcaacattccatattgaacaatattgtttttgtatttggagtttgaggcaatgatcatgtgttggaggattatgtgggcagga--tttattt |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |
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| T |
13946111 |
ttttgtgagcaacattccatattgaacaatattgtttttgtatttggagtttgaggcaatgatcatgtgttggaggattatgtgggcaagattttttttt |
13946012 |
T |
|
| Q |
405 |
ttgttttagtagcgacgtgatgcatgagaagtaaatcgttgtcagtaaccttttattt |
462 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13946011 |
tttttttagtagcgacgtgatgcatgagaagtaaatcgttgtcagtaaccttttattt |
13945954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Complemental strand, 14087600 - 14087143
Alignment:
| Q |
19 |
aagcttttgggtcttgactgaaccaagattttaggtccttaatatagtctaactaagcttttggatcgagaccgtagtctaacgaagatttcaataataa |
118 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14087600 |
aagcttttgggtcttgactgaaccaagaatttaggtccttaatatagtctaactaagcttttggatcgagaccgtagtctaaccaagatttcaataataa |
14087501 |
T |
|
| Q |
119 |
tcctcatcgagattcagatgaatgatcaaccatgcacccattgaacgacatggactaacacattccattgagatagtaggagaggcaggcttttcagtct |
218 |
Q |
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| T |
14087500 |
tcctcatcgagattcagatgaatgatcaaccatgcacccattgaacgacatggactaacacattccattgagatagtaggagaggcaggcttttcagtct |
14087401 |
T |
|
| Q |
219 |
tt--gggtgagtttcatatgtctcacatttttgcaagtgaaggacttaacaagat---------ttcatcaaatagagg-acgttgaaacgctcgaaata |
306 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
14087400 |
tttggggtgagtttcatatgtctcacatttttgcaagtgaaggacttgacaagatttcatcatcttcatcaaatagaggaacgttgaaacgctcgaaata |
14087301 |
T |
|
| Q |
307 |
ttttgtgagcaacattccatattgaacaatattgtttttgtatttggagtttgaggcaatgatcatgtgttggaggattatgtgggcagga--tttattt |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |
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| T |
14087300 |
ttttgtgagcaacattccatattgaacaatattgtttttgtatttggagtttgaggcaatgatcatgtgttggaggattatgtgggcaagattttttttt |
14087201 |
T |
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| Q |
405 |
ttgttttagtagcgacgtgatgcatgagaagtaaatcgttgtcagtaaccttttattt |
462 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14087200 |
tttttttagtagcgacgtgatgcatgagaagtaaatcgttgtcagtaaccttttattt |
14087143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 462 - 548
Target Start/End: Complemental strand, 13945887 - 13945801
Alignment:
| Q |
462 |
tttggaggcaatggaaaattcatagattatttatgagttgatgttgaacatttatcagattaggtcggttttgcacttgatgtccat |
548 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13945887 |
tttggaggcaatggaaaattcatagattatttatgagttgatgttgaacatttatcagattaggtcggttttgcacttgatttccat |
13945801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 462 - 548
Target Start/End: Complemental strand, 14087076 - 14086990
Alignment:
| Q |
462 |
tttggaggcaatggaaaattcatagattatttatgagttgatgttgaacatttatcagattaggtcggttttgcacttgatgtccat |
548 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14087076 |
tttggaggcaatggaaaattcatagattatttatgagttgatgttgaacatttatcagattaggtcggttttgcacttgatttccat |
14086990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 27743829 - 27743867
Alignment:
| Q |
340 |
gtttttgtatttggagtttgaggcaatgatcatgtgttg |
378 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |
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| T |
27743829 |
gtttttgtatttggaatttgaggcaatgatcatgtgttg |
27743867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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