View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7457_low_8 (Length: 469)
Name: NF7457_low_8
Description: NF7457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7457_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Original strand, 34573822 - 34574256
Alignment:
| Q |
16 |
atccactacctttgattgatcactatgattaacaacattgacaacaagcacatcctcagcaatatccttcaccttaaaaacaaactcctcgttccaaatg |
115 |
Q |
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| T |
34573822 |
atccactacctttgattgatcactatgattaacaacattgacaacaagcacatcctcagcaatatccttcaccttaaaaacaaactcctcgttccaaatg |
34573921 |
T |
|
| Q |
116 |
ggattgaacgtgtttttcaatatccttgtcttgtatttaaactttccaagtttaagcttcacgcgagaatttttcacgggtaagtctttggcttctaata |
215 |
Q |
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| T |
34573922 |
ggattgaacgtgtttttcaatatccttgtcttgtatttaaactttccaagtttaagcttcacacgagaatttttcacgggtaagtctttggcttctaata |
34574021 |
T |
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| Q |
216 |
cacagacatataacttgttcaacatagtttataaagcaaaagcggtatggcatgttggattggagaagagaaaacggtgataatgggttttagtgtttta |
315 |
Q |
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| T |
34574022 |
cacagacatataacttgttcaacatagtttataaagcaaaagcggtatggcatgttggattggagaagagaaaacggtgataatgggttttagtgtttta |
34574121 |
T |
|
| Q |
316 |
tacacttctgttttgttattagtggcagaagaatacgtgtaagtagaagaaaatgacacgtggaggggtagcacagggacaaaatagaacgtggaatttg |
415 |
Q |
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| T |
34574122 |
tacacttctgttttgttattagtggcagaagaatacgtgtaagtagaagaaaatgacacgtggagggttagcacatggacaaaatagaacgtggaatttg |
34574221 |
T |
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| Q |
416 |
ggtaagtgaaagctagtttgtcaccactctaagat |
450 |
Q |
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| T |
34574222 |
ggtaagtgaaagctagtttgtcattactctaagat |
34574256 |
T |
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