View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7457_low_9 (Length: 439)
Name: NF7457_low_9
Description: NF7457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7457_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 35803995 - 35803669
Alignment:
| Q |
1 |
acaagcttttgtaaagggattttaagaaataaaaccacattatcaaaaggcaagttaaagagccttaaaagttgcaactgatnnnnnnnnnntgataaca |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |
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| T |
35803995 |
acaaacttttgtaaagggattttaagaaataaaaccacattatcaaaaggcaagttaaagagccttaaaaattgcaactgataaaaaaaa--tgacaaca |
35803898 |
T |
|
| Q |
101 |
aaaataatgcaattttgaattaaaaagttggcttgaattttgtttttctcttctgaaaggaagggacaaaaacaaaatgataaatctggaattgagtata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35803897 |
aaaataatgcaattttgaattaaaaagttggcttgaattttgtttttctcttctgaaaggaagggacaaaaacaaaatgataaatctggaattgagtata |
35803798 |
T |
|
| Q |
201 |
gggagtagggtttgcacatcatcttccaatatatatat------agagagagcagcattccggacagaaaccctaaacgtactctttcttccttacattt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35803797 |
gggagtagggtttgcacatcatcttccaatatatatatatatagagagagagcagcattccggacagaaaccctaaacgtactctttcttccttacattt |
35803698 |
T |
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| Q |
295 |
cgaaatccctaattcagcagcgacaacat |
323 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
35803697 |
tgaaatccctaattcagcagcgacaacat |
35803669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 35851167 - 35851255
Alignment:
| Q |
244 |
gagcagcattccggacagaaacccta-----aacgtactctttcttccttacatttcgaaatccctaattcagcagcgacaacatgtcc |
327 |
Q |
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| T |
35851167 |
gagcagcattccggagagaaaccctaacctaaacgtactctttcttccatacatttccaaaaccctaattcagcagtgacaacatgtcc |
35851255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 415
Target Start/End: Original strand, 35851403 - 35851457
Alignment:
| Q |
361 |
attcaacaaatttcttgttaagctcaagaccatggtagctttaccattggagcgt |
415 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
35851403 |
attcaacaaatttcttgttaggctctagaccatggtagctttaccattggagcgt |
35851457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 332 - 399
Target Start/End: Original strand, 16833516 - 16833583
Alignment:
| Q |
332 |
ggtgagttcaatttcgagcccctcaccggattcaacaaatttcttgttaagctcaagaccatggtagc |
399 |
Q |
| |
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| T |
16833516 |
ggtgagttcaatttccagcccctcaccagattcaaaaaatttcttgttactctgaagaccatggtagc |
16833583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 183
Target Start/End: Original strand, 55695710 - 55695874
Alignment:
| Q |
7 |
ttttgtaaagggattttaagaaataaaaccacattatcaaaaggcaagttaaagagccttaaaagt-tgcaactgatnnnnnnnnnntgataacaaaaat |
105 |
Q |
| |
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||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||| || |||||||| |
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| T |
55695710 |
ttttggaaagggattttatgaaataaaaccacattatcaaacggcaagttaaagagccttaaaaaactgcaactaatg--------------acaaaaat |
55695795 |
T |
|
| Q |
106 |
aatgcaattttgaattaaaaagttggcttgaattttgtttttctcttctgaaaggaagggacaaaaacaa-aatgataa |
183 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| |
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| T |
55695796 |
aatgcaattttgatttaaaaagttggcttgaattttgtttttctcttctgaaaggaaaggacaaaagcaagaatgataa |
55695874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 390
Target Start/End: Complemental strand, 56209997 - 56209939
Alignment:
| Q |
332 |
ggtgagttcaatttcgagcccctcaccggattcaacaaatttcttgttaagctcaagac |
390 |
Q |
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||||| |||||||||| ||||| ||||| ||||| |||||||| |||||||||||||| |
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| T |
56209997 |
ggtgacttcaatttcgtgccccataccggcttcaaaaaatttctcgttaagctcaagac |
56209939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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