View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7458_high_2 (Length: 484)

Name: NF7458_high_2
Description: NF7458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7458_high_2
NF7458_high_2
[»] chr5 (20 HSPs)
chr5 (17-478)||(37232730-37233191)
chr5 (17-138)||(42076085-42076206)
chr5 (36-147)||(17037572-17037683)
chr5 (346-475)||(37385086-37385215)
chr5 (54-149)||(40401987-40402082)
chr5 (350-460)||(37218079-37218189)
chr5 (350-460)||(37223793-37223903)
chr5 (31-147)||(5079019-5079135)
chr5 (77-147)||(9333562-9333632)
chr5 (52-143)||(19985028-19985119)
chr5 (77-147)||(9354390-9354460)
chr5 (56-144)||(7410856-7410944)
chr5 (36-147)||(23679470-23679581)
chr5 (36-147)||(23855230-23855341)
chr5 (60-138)||(10869475-10869552)
chr5 (60-147)||(30786296-30786383)
chr5 (84-147)||(31068971-31069033)
chr5 (19-72)||(18191842-18191895)
chr5 (52-147)||(12042152-12042248)
chr5 (113-147)||(18191886-18191920)
[»] chr2 (13 HSPs)
chr2 (36-149)||(11017484-11017597)
chr2 (31-147)||(41573422-41573538)
chr2 (31-147)||(31342671-31342787)
chr2 (44-147)||(30267032-30267135)
chr2 (36-138)||(24479190-24479292)
chr2 (46-147)||(7718214-7718315)
chr2 (36-144)||(7702461-7702569)
chr2 (51-147)||(15513696-15513792)
chr2 (44-144)||(44920989-44921089)
chr2 (37-147)||(26734777-26734887)
chr2 (36-143)||(40016624-40016732)
chr2 (42-137)||(22966564-22966659)
chr2 (31-138)||(15540253-15540360)
[»] chr3 (16 HSPs)
chr3 (17-147)||(26707888-26708018)
chr3 (59-147)||(16457314-16457402)
chr3 (36-147)||(2943174-2943285)
chr3 (17-129)||(26735681-26735793)
chr3 (36-147)||(1627907-1628018)
chr3 (44-147)||(7407722-7407825)
chr3 (44-147)||(13846021-13846124)
chr3 (36-144)||(9633402-9633510)
chr3 (56-147)||(2550195-2550286)
chr3 (41-136)||(36035329-36035424)
chr3 (42-144)||(27713405-27713507)
chr3 (44-147)||(1654605-1654708)
chr3 (42-147)||(5498507-5498611)
chr3 (71-147)||(1613208-1613284)
chr3 (105-143)||(27259474-27259512)
chr3 (36-108)||(28745043-28745115)
[»] chr8 (20 HSPs)
chr8 (17-147)||(6403622-6403751)
chr8 (36-147)||(19369870-19369981)
chr8 (36-144)||(6801790-6801898)
chr8 (36-147)||(19448477-19448588)
chr8 (36-147)||(19532488-19532599)
chr8 (44-147)||(45356080-45356183)
chr8 (36-147)||(5528772-5528883)
chr8 (56-147)||(28249055-28249146)
chr8 (17-147)||(31347378-31347508)
chr8 (31-147)||(25637673-25637788)
chr8 (44-147)||(17634439-17634542)
chr8 (44-147)||(25638836-25638939)
chr8 (77-147)||(29553658-29553728)
chr8 (36-143)||(6223434-6223541)
chr8 (44-138)||(5000717-5000811)
chr8 (42-147)||(5650911-5651016)
chr8 (52-147)||(29345460-29345556)
chr8 (52-147)||(18766946-18767041)
chr8 (36-147)||(14997650-14997761)
chr8 (50-138)||(31369080-31369168)
[»] chr4 (14 HSPs)
chr4 (17-90)||(48465459-48465532)
chr4 (17-147)||(24558936-24559066)
chr4 (36-147)||(1684912-1685023)
chr4 (44-147)||(43600296-43600399)
chr4 (44-147)||(47066002-47066105)
chr4 (36-147)||(1152073-1152184)
chr4 (31-129)||(21317485-21317583)
chr4 (44-147)||(53300380-53300483)
chr4 (51-144)||(37750965-37751058)
chr4 (51-143)||(21539247-21539338)
chr4 (80-147)||(4881073-4881140)
chr4 (98-149)||(48464067-48464118)
chr4 (80-145)||(4904144-4904209)
chr4 (17-145)||(45641682-45641809)
[»] chr1 (12 HSPs)
chr1 (43-147)||(12189981-12190085)
chr1 (31-147)||(51758782-51758898)
chr1 (58-145)||(3399653-3399740)
chr1 (51-147)||(28636932-28637028)
chr1 (36-147)||(39368599-39368711)
chr1 (74-147)||(16222807-16222880)
chr1 (36-147)||(897484-897594)
chr1 (44-147)||(1843981-1844084)
chr1 (80-147)||(13208641-13208708)
chr1 (97-147)||(5911685-5911735)
chr1 (88-147)||(15214356-15214415)
chr1 (97-147)||(15204623-15204673)
[»] chr6 (18 HSPs)
chr6 (17-136)||(4485506-4485625)
chr6 (44-147)||(16734834-16734937)
chr6 (17-147)||(23264437-23264567)
chr6 (31-147)||(15361744-15361860)
chr6 (36-147)||(12591862-12591973)
chr6 (36-147)||(14669306-14669417)
chr6 (51-147)||(6684123-6684218)
chr6 (44-147)||(11936735-11936838)
chr6 (44-147)||(11948715-11948818)
chr6 (36-147)||(17719683-17719794)
chr6 (60-148)||(29667899-29667987)
chr6 (42-147)||(34374854-34374961)
chr6 (45-147)||(9631123-9631226)
chr6 (52-138)||(10070693-10070778)
chr6 (97-147)||(23904373-23904423)
chr6 (74-138)||(2941044-2941108)
chr6 (63-138)||(7601321-7601395)
chr6 (97-145)||(10935802-10935850)
[»] scaffold0576 (1 HSPs)
scaffold0576 (31-147)||(6728-6844)
[»] chr7 (14 HSPs)
chr7 (36-147)||(9242444-9242555)
chr7 (44-147)||(4685371-4685474)
chr7 (36-147)||(26621051-26621162)
chr7 (52-147)||(30089764-30089859)
chr7 (36-149)||(3234354-3234467)
chr7 (52-138)||(16086525-16086611)
chr7 (36-144)||(10022156-10022264)
chr7 (51-147)||(26608514-26608610)
chr7 (17-124)||(26701083-26701189)
chr7 (44-133)||(20277328-20277417)
chr7 (59-147)||(26224961-26225049)
chr7 (44-148)||(27135957-27136061)
chr7 (56-147)||(26205395-26205486)
chr7 (97-138)||(16170309-16170350)
[»] scaffold0069 (1 HSPs)
scaffold0069 (36-147)||(40658-40769)
[»] scaffold0684 (1 HSPs)
scaffold0684 (36-147)||(707-818)
[»] scaffold0002 (1 HSPs)
scaffold0002 (17-138)||(446224-446345)


Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 17 - 478
Target Start/End: Complemental strand, 37233191 - 37232730
Alignment:
Q  17 aaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaat 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37233191 aaatataaatatgaaatagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaat 37233092  T
Q  117 gttactaaatttaattagtaacttttttctttagatctaaattatgttgtagtgtcgttagatacgaataattgattagtagtaagaataaggtggattt 216  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  37233091 gttactaaatttaattagtaacttttttctttagatctcaattatcttgtagtgtcgttagttacaaataattgattagtagtaagaataaggtggattt 37232992  T
Q  217 atcatggtaatattctttaaacgcaaacggggaaagatgctatatccttcgaaagaaactaaggaacggatctttgatttcaaaactgcaaattagatat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37232991 atcatggtaatattctttaaacgcaaacggggaaagatgctatatccttcgaaagaaactaaggaacggatctttgatttcaaaactgcaaattagatat 37232892  T
Q  317 gatagcaatcaaccacataaaaagaaagggcagaattcatcatactcgggcggcatgtaaccaaatgtgcctgccatgtgattagtgttatctgttgaat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37232891 gatagcaatcaaccacataaaaagaaagggcagaattcatcatactcgggcggcatgtaaccaaatgtgcctgccatgtgattagtgttatctgttgaat 37232792  T
Q  417 ttgcgatattagtcagcttggttaatccaaaatctgcaatctgtgataacaagaataatata 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37232791 ttgcgatattagtcagcttggttaatccaaaatctgcaatctgtgataacaagaataatata 37232730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 42076206 - 42076085
Alignment:
Q  17 aaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaat 116  Q
    ||||||||||||| |||| |||||||||||||| |||||||||||||||| || ||||| ||||||||||||| ||||| || |||||||||| ||||||    
T  42076206 aaatataaatatgtaacaatttttaaatgttaccgataatactataaaatattcctgaagctttttagtaacatggactttatctaacaattgttcaaat 42076107  T
Q  117 gttactaaatttaattagtaac 138  Q
    ||||||||||||||||||||||    
T  42076106 gttactaaatttaattagtaac 42076085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 17037683 - 17037572
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| |||||| |||||||||||||||||| ||| ||||| ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  17037683 tttttaattgttacagataatactataaaatgtaactaaaactctttagtaacactgactttacctaacaattgttcaaatgttactaaatttaattagt 17037584  T
Q  136 aacttttttctt 147  Q
    ||| ||||||||    
T  17037583 aacatttttctt 17037572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 346 - 475
Target Start/End: Original strand, 37385086 - 37385215
Alignment:
Q  346 gcagaattcatcatactcgggcggcatgtaaccaaatgtgcctgccatgtgattagtgttatctgttgaatttgcgatattagtcagcttggttaatcca 445  Q
    |||||||||||||||||| || |||||||||||||||||||| ||||  |||  |||||||||||||||||||||   || ||| ||| |||||||||||    
T  37385086 gcagaattcatcatactcaggtggcatgtaaccaaatgtgccagccacatgaagagtgttatctgttgaatttgcagaatcagtaagcctggttaatcca 37385185  T
Q  446 aaatctgcaatctgtgataacaagaataat 475  Q
    ||||||||||||||| |||| |||||||||    
T  37385186 aaatctgcaatctgtaataataagaataat 37385215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 40401987 - 40402082
Alignment:
Q  54 aatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttcttta 149  Q
    |||||||||||||||| ||||| |||||||| ||||| |||| ||||||||||||| ||||| || ||||||||||||||||||| ||||||||||    
T  40401987 aatactataaaatgttgctgaagctttttagcaacacagactttacctaacaattgttcaaacgtaactaaatttaattagtaacatttttcttta 40402082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 350 - 460
Target Start/End: Complemental strand, 37218189 - 37218079
Alignment:
Q  350 aattcatcatactcgggcggcatgtaaccaaatgtgcctgccatgtgattagtgttatctgttgaatttgcgatattagtcagcttggttaatccaaaat 449  Q
    |||||||||||||| || |||||||||||||||||||||||||  |||  ||||||||||| |||||||||   || ||| |||||||||||||||||||    
T  37218189 aattcatcatactcaggtggcatgtaaccaaatgtgcctgccacatgaacagtgttatctgctgaatttgcagcatcagtaagcttggttaatccaaaat 37218090  T
Q  450 ctgcaatctgt 460  Q
    |||||| ||||    
T  37218089 ctgcaacctgt 37218079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 350 - 460
Target Start/End: Complemental strand, 37223903 - 37223793
Alignment:
Q  350 aattcatcatactcgggcggcatgtaaccaaatgtgcctgccatgtgattagtgttatctgttgaatttgcgatattagtcagcttggttaatccaaaat 449  Q
    |||||||||||||| || |||||||||||||||||||||||||  |||| ||||||||||| |||| ||||   || ||| |||||||||||||||||||    
T  37223903 aattcatcatactcaggtggcatgtaaccaaatgtgcctgccacatgatcagtgttatctgctgaacttgcagcatcagtaagcttggttaatccaaaat 37223804  T
Q  450 ctgcaatctgt 460  Q
    |||||| ||||    
T  37223803 ctgcaacctgt 37223793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 5079019 - 5079135
Alignment:
Q  31 aacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaa 130  Q
    |||| ||||| | |||||| |||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| ||||||||||    
T  5079019 aacactttttgattgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaa 5079118  T
Q  131 ttagtaacttttttctt 147  Q
    |||||||| ||||||||    
T  5079119 ttagtaacatttttctt 5079135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 9333562 - 9333632
Alignment:
Q  77 ctttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    |||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9333562 ctttttagtaacatcgactttacctaacaattgctcaaatgttactaaatttaattagtaacatttttctt 9333632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 19985119 - 19985028
Alignment:
Q  52 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    ||||||||||||||||| ||| ||||| |||||||||  ||||| ||||||||||||  |||||||||||||||| ||||||||||| ||||    
T  19985119 ataatactataaaatgtaactaaaactctttagtaacctggactttacctaacaattattcaaatgttactaaatctaattagtaacatttt 19985028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 9354390 - 9354460
Alignment:
Q  77 ctttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    ||||||||||||| || || |||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  9354390 ctttttagtaacatgggctttacctaacaattgctcaaatgttattaaatttaattagtaacatttttctt 9354460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 7410944 - 7410856
Alignment:
Q  56 tactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaactttttt 144  Q
    ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| |||||||||||||||||| |||||    
T  7410944 tactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacattttt 7410856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 23679581 - 23679470
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| ||||||  ||||||||||||||||| ||| ||||| |||||||||||| ||| || |||| ||||| || |||||| | ||||||||||| |    
T  23679581 tttttaattgttacaaataatactataaaatgtaactaaaactctttagtaacacgaactttatctaataattgttcgaatgttgcaaaatttaattaat 23679482  T
Q  136 aacttttttctt 147  Q
    ||| ||||||||    
T  23679481 aacatttttctt 23679470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 23855230 - 23855341
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| ||||||  ||||||||||||||||| ||| ||||| |||||||||||| ||| || |||| ||||| || |||||| | ||||||||||| |    
T  23855230 tttttaattgttacaaataatactataaaatgtaactaaaactctttagtaacacgaactttatctaataattgttcgaatgttgcaaaatttaattaat 23855329  T
Q  136 aacttttttctt 147  Q
    ||| ||||||||    
T  23855330 aacatttttctt 23855341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 10869552 - 10869475
Alignment:
Q  60 ataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 138  Q
    ||||| |||||| | |||| |||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  10869552 ataaagtgttaccgtaactctttagtaagaggga-tatacctaacaattgttcaaatgttactaaatttaattagtaac 10869475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 147
Target Start/End: Complemental strand, 30786383 - 30786296
Alignment:
Q  60 ataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    ||||||||| ||| || ||||||||||||| ||  | ||||||||||||  ||||||||||||||||| ||| |||||| ||||||||    
T  30786383 ataaaatgtgactaaatctttttagtaacaaggcatttacctaacaattattcaaatgttactaaattgaatcagtaacatttttctt 30786296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 31068971 - 31069033
Alignment:
Q  84 gtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  31068971 gtaacacgggctttacctaacaattgttcaa-tgttactaaatttaattagtaacatttttctt 31069033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 18191842 - 18191895
Alignment:
Q  19 atataaatatgaaacagtttttaaatgttactgataatactataaaatgttact 72  Q
    ||||||||||| |||| ||||||| |||||||||||||||||| ||||||||||    
T  18191842 atataaatatgtaacaatttttaactgttactgataatactattaaatgttact 18191895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 12042152 - 12042248
Alignment:
Q  52 ataatactataaaatgttactgaaactttttagtaacacgga-ctatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    |||||| |||||||||| ||| ||||| |||||||| | |   || ||||||||||||| ||||||||||||||||| ||| |||||| ||||||||    
T  12042152 ataataatataaaatgtaactaaaactctttagtaataggtttctttacctaacaattgttcaaatgttactaaattgaatcagtaacatttttctt 12042248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 147
Target Start/End: Original strand, 18191886 - 18191920
Alignment:
Q  113 aaatgttactaaatttaattagtaacttttttctt 147  Q
    |||||||||||||||||||||||||| ||||||||    
T  18191886 aaatgttactaaatttaattagtaacatttttctt 18191920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 11017597 - 11017484
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  11017597 tttttaaatgttactgataatactataaagtgttactgaagctttttagtaacacggactttacctaacaattggtcaaatgttactaaatttaattagt 11017498  T
Q  136 aacttttttcttta 149  Q
    |||  |||||||||    
T  11017497 aacaattttcttta 11017484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 41573538 - 41573422
Alignment:
Q  31 aacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaa 130  Q
    |||| ||| ||||||||||| ||||||||||||||||||| ||||    |||||||||||||  | ||||||||||||| | || |||||||||||||||    
T  41573538 aacattttctaaatgttactaataatactataaaatgttattgaagtaatttagtaacacggggtttacctaacaattgtttaactgttactaaatttaa 41573439  T
Q  131 ttagtaacttttttctt 147  Q
    |||||||| ||||||||    
T  41573438 ttagtaacatttttctt 41573422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 31342671 - 31342787
Alignment:
Q  31 aacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaa 130  Q
    |||| ||||| | |||||| |||| ||||||||||||| ||| ||||  ||||||||||||| || || |||||||||| |||| |||| ||||||||||    
T  31342671 aacactttttgattgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaa 31342770  T
Q  131 ttagtaacttttttctt 147  Q
    |||||||| ||||||||    
T  31342771 ttagtaacatttttctt 31342787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 30267135 - 30267032
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    |||||| |||| ||||||||||||| ||| ||||| ||| ||||||||| || ||||||||||||| |||  |||||||||||||||||| |||| ||||    
T  30267135 tgttacggatagtactataaaatgtaactaaaactctttggtaacacgggctttacctaacaattgttcaggtgttactaaatttaattactaacatttt 30267036  T
Q  144 tctt 147  Q
    ||||    
T  30267035 tctt 30267032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 24479292 - 24479190
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||| |||||||  |||||||||||||||| | ||| || || ||||||||||||  || ||||||| ||||| |||||||||||||||||||||||||    
T  24479292 tttttgaatgttatagataatactataaaatataactaaagctctttagtaacacgagctttacctaagaattgttcaaatgttactaaatttaattagt 24479193  T
Q  136 aac 138  Q
    |||    
T  24479192 aac 24479190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 7718315 - 7718214
Alignment:
Q  46 ttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttc 145  Q
    |||| |||| ||||||||||||| | | ||||| |||||||||||||||| || |||||||||| |||  ||||||||||||||||||||||  ||||||    
T  7718315 ttacggatagtactataaaatgtaattaaaactctttagtaacacggactttatctaacaattgttcatgtgttactaaatttaattagtaatatttttc 7718216  T
Q  146 tt 147  Q
    ||    
T  7718215 tt 7718214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 7702569 - 7702461
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    |||||||||||||| |||||||||| ||||||| ||| || || |||||||| | || || |||||||||||||  ||||||||||||| |||||||| |    
T  7702569 tttttaaatgttacagataatactacaaaatgtaactaaagctctttagtaatatgggctttacctaacaattgtacaaatgttactaattttaattaat 7702470  T
Q  136 aactttttt 144  Q
    ||| |||||    
T  7702469 aacattttt 7702461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 15513792 - 15513696
Alignment:
Q  51 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    |||| ||||||||||||| ||| || |||||||||||||||  || ||||||||||||| |||| |||||| |||||||| ||||||| ||||||||    
T  15513792 gatagtactataaaatgtaactaaatctttttagtaacacgagctttacctaacaattgttcaagtgttacaaaatttaactagtaacatttttctt 15513696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 44921089 - 44920989
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    |||||| |||| ||||||||||||| ||| ||||| ||||||||||||  || ||||||||||||| | |  ||||||||||||||||||||||| ||||    
T  44921089 tgttacggatagtactataaaatgtaactaaaactctttagtaacacgagctttacctaacaattgtttaggtgttactaaatttaattagtaacatttt 44920990  T
Q  144 t 144  Q
    |    
T  44920989 t 44920989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 26734887 - 26734777
Alignment:
Q  37 ttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagta 136  Q
    |||| |||||||||||||||| | ||||||| |||| || || |||| ||| | ||||| ||||||||||||  |||||| || ||||||||||||| ||    
T  26734887 ttttgaatgttactgataatattgtaaaatgatactaaagctctttaataatatggactttacctaacaattattcaaatattgctaaatttaattaata 26734788  T
Q  137 acttttttctt 147  Q
    | |||||||||    
T  26734787 agttttttctt 26734777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 40016732 - 40016624
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaa-ctttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattag 134  Q
    ||||| |||||||| |||||||| ||||||||| | | ||| || |||||||| | || || ||||||||||||  ||||||||||||||||||||| ||    
T  40016732 tttttgaatgttacagataatacaataaaatgtaattaaaatctctttagtaatagggtctttacctaacaattattcaaatgttactaaatttaatcag 40016633  T
Q  135 taacttttt 143  Q
    |||| ||||    
T  40016632 taacatttt 40016624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 22966659 - 22966564
Alignment:
Q  42 aatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaa 137  Q
    |||||||| ||||||||| |||||||| ||| ||  | |||||||||| || || ||||||||||||| | |||||| ||||||||| ||||||||    
T  22966659 aatgttacagataatactctaaaatgtaactaaaggtctttagtaacaggggctttacctaacaattgtttaaatgtaactaaatttcattagtaa 22966564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 15540253 - 15540360
Alignment:
Q  31 aacagtttttaaatgttactgataatactataaaa-tgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaattta 129  Q
    |||| ||||||| ||||||| ||||||||| |||| ||||||||| ||  ||||||| |||  ||| |||||| |||||| | ||||||||||| || ||    
T  15540253 aacattttttaattgttactaataatactaaaaaaatgttactgataccgtttagtaccacaaactttacctatcaattgtt-aaatgttactagatata 15540351  T
Q  130 attagtaac 138  Q
    |||||||||    
T  15540352 attagtaac 15540360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 26708018 - 26707888
Alignment:
Q  17 aaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaat 116  Q
    |||||| |||||  |||||||||| | ||||||||| |||||||| ||||||||||||| || ||||||||||  |||| ||||||||||||| ||||||    
T  26708018 aaatatgaatatacaacagttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacctaacaattgttcaaat 26707919  T
Q  117 gttactaaatttaattagtaacttttttctt 147  Q
    |||||||||||||||||||||| ||||||||    
T  26707918 gttactaaatttaattagtaacatttttctt 26707888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 16457314 - 16457402
Alignment:
Q  59 tataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    ||||||||||||||||| |||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16457314 tataaaatgttactgaagctttttagtaacacgagctttacctaacaattgctcaaatgttactaaatttaattagtaacatttttctt 16457402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 2943174 - 2943285
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| |||||| |||||||||||||||||| ||| ||||  ||||||||||||| ||  |||||||||||| || ||||||||||||||||||||||    
T  2943174 tttttaattgttacagataatactataaaatgtaactaaaacactttagtaacacgggcttaacctaacaattgttcgaatgttactaaatttaattagt 2943273  T
Q  136 aacttttttctt 147  Q
    ||| ||||||||    
T  2943274 aacatttttctt 2943285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 26735793 - 26735681
Alignment:
Q  17 aaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaat 116  Q
    |||||| |||||  |||||||||| ||||||||| |||||||||| |||||||| |||| || |||||||||| ||| | ||||||||||||| ||||||    
T  26735793 aaatatgaatatacaacagttttttaatgttactaataatactatgaaatgttattgaagctctttagtaacatggattttacctaacaattgttcaaat 26735694  T
Q  117 gttactaaattta 129  Q
    |||||||||||||    
T  26735693 gttactaaattta 26735681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 1627907 - 1628018
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| ||||||  ||||||||||||||||| ||| ||||| ||| |||||||||||| ||| ||||||||| |||| ||||||||||||||||||||    
T  1627907 tttttaattgttacatataatactataaaatgtaactaaaactcttttgtaacacggactttacttaacaattgttcaagtgttactaaatttaattagt 1628006  T
Q  136 aacttttttctt 147  Q
    ||  ||||||||    
T  1628007 aatatttttctt 1628018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 7407722 - 7407825
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    ||||||||||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| |||||||||||||||||  ||||    
T  7407722 tgttactgatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaatatttt 7407821  T
Q  144 tctt 147  Q
    ||||    
T  7407822 tctt 7407825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 13846124 - 13846021
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    |||||| |||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| |||||||||||||||||| ||||    
T  13846124 tgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttt 13846025  T
Q  144 tctt 147  Q
    ||||    
T  13846024 tctt 13846021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 9633402 - 9633510
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||| ||||||||  ||||| || |||||||| ||| ||||| |||||||||| || || ||||||||||||| | |||||| ||||||||||||||||    
T  9633402 tttttgaatgttacatataatgctctaaaatgtaactaaaactctttagtaacaggggctttacctaacaattgtttaaatgtaactaaatttaattagt 9633501  T
Q  136 aactttttt 144  Q
    ||| |||||    
T  9633502 aacattttt 9633510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 2550286 - 2550195
Alignment:
Q  56 tactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    ||||||||||||| ||| ||||  ||||||||||| | || ||||||||||||| |||| |||| |||||||||||||||||| ||||||||    
T  2550286 tactataaaatgtaactaaaacactttagtaacacaggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttctt 2550195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 36035424 - 36035329
Alignment:
Q  41 aaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagta 136  Q
    |||||||||  ||||||||||||||||| ||| || || ||||||||||||  || |||||||||||||  ||| |||||||||||||||||||||    
T  36035424 aaatgttacatataatactataaaatgtaactaaagctctttagtaacacgagctttacctaacaattgtacaattgttactaaatttaattagta 36035329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 27713405 - 27713507
Alignment:
Q  42 aatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttt 141  Q
    ||||||||| ||||||||||||||| || || ||||| ||||||||||  |  | | ||||||||||  | |||||||||||||||||||||||||||||    
T  27713405 aatgttactaataatactataaaatattgctaaaactatttagtaacataggttttgcctaacaattatttaaatgttactaaatttaattagtaacttt 27713504  T
Q  142 ttt 144  Q
    |||    
T  27713505 ttt 27713507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 1654708 - 1654605
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    |||||| |||| ||||||||||||| ||| ||||  |||| |||||| | || ||| ||||||||| |||| |||| |||||||||||||||||| ||||    
T  1654708 tgttacagatagtactataaaatgtaactaaaacactttaataacacaggctttacttaacaattgttcaagtgttgctaaatttaattagtaacatttt 1654609  T
Q  144 tctt 147  Q
    ||||    
T  1654608 tctt 1654605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 5498611 - 5498507
Alignment:
Q  42 aatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttt 141  Q
    ||||||||| ||||||| ||||||| ||||  ||||| ||||||||||  |  | ||||||||||||| ||| | |||||||||||||||||||||| ||    
T  5498611 aatgttactaataatac-ataaaatattaccaaaactctttagtaacataggttttacctaacaattgttcagaagttactaaatttaattagtaacatt 5498513  T
Q  142 tttctt 147  Q
    ||||||    
T  5498512 tttctt 5498507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 1613208 - 1613284
Alignment:
Q  71 ctgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    ||||| || |||||||||| || || ||||||| ||||| |||| |||||||||||||| |||||||| ||||||||    
T  1613208 ctgaagctatttagtaacaggggctttacctaaaaattggtcaactgttactaaatttatttagtaacatttttctt 1613284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 27259474 - 27259512
Alignment:
Q  105 aattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  27259474 aattgttcaaatgttactaaatttaattagtaacatttt 27259512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 28745115 - 28745043
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaatt 108  Q
    ||||| ||||||||  |||||||| |||||||| ||| ||||| |||||||||| |  || ||||||||||||    
T  28745115 tttttgaatgttacaaataatactctaaaatgtaactaaaactctttagtaacatgtgctttacctaacaatt 28745043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 6403751 - 6403622
Alignment:
Q  17 aaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaat 116  Q
    ||||||||||||| |||| ||||| | ||||||  || ||  ||||||||||||||||| ||||||| |||||||| || ||||||||||||||||||||    
T  6403751 aaatataaatatgcaacatttttttactgttaca-attatgatataaaatgttactgaagctttttaataacacgggctttacctaacaattgctcaaat 6403653  T
Q  117 gttactaaatttaattagtaacttttttctt 147  Q
    |||||||||||||||||||||| ||||||||    
T  6403652 gttactaaatttaattagtaacatttttctt 6403622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 19369870 - 19369981
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| |||||| |||||||||||||||||| ||| ||||| |||||||||||||||| || |||||||||| || | |||| | |||||||||||||    
T  19369870 tttttaattgttacagataatactataaaatgtaactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagt 19369969  T
Q  136 aacttttttctt 147  Q
    ||| ||||||||    
T  19369970 aacatttttctt 19369981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 6801790 - 6801898
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||| |||||||| | ||||||| |||||||| ||| ||||| |||||||||| || || ||||||||||||| |||| ||||||||||||||||||||    
T  6801790 ttttttaatgttacagctaatactctaaaatgtaactaaaactctttagtaacaggggctttacctaacaattgttcaactgttactaaatttaattagt 6801889  T
Q  136 aactttttt 144  Q
    ||| |||||    
T  6801890 aacattttt 6801898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 19448588 - 19448477
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| |||||| |||||||||||||||| | ||| ||||| |||||||||||||||| || |||||||||| || | |||| | |||||||||||||    
T  19448588 tttttaattgttacagataatactataaaatataactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagt 19448489  T
Q  136 aacttttttctt 147  Q
    ||| ||||||||    
T  19448488 aacatttttctt 19448477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 19532488 - 19532599
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| |||||| |||||||||||||||| | ||| ||||| |||||||||||||||| || |||||||||| || | |||| | |||||||||||||    
T  19532488 tttttaattgttacagataatactataaaatataactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagt 19532587  T
Q  136 aacttttttctt 147  Q
    ||| ||||||||    
T  19532588 aacatttttctt 19532599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 45356080 - 45356183
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    |||||| |||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| |||||||||||||||||| ||||    
T  45356080 tgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttt 45356179  T
Q  144 tctt 147  Q
    ||||    
T  45356180 tctt 45356183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 5528883 - 5528772
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| |||||| ||||||||| |||||||| ||| ||||| ||||||||||| |||| || |||||||||| |  | |||| |||||||||||||||    
T  5528883 tttttaactgttacagataatactgtaaaatgtaactaaaactctttagtaacacagactttatctaacaattgtttgagtgttgctaaatttaattagt 5528784  T
Q  136 aacttttttctt 147  Q
    ||| ||||||||    
T  5528783 aacatttttctt 5528772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 28249055 - 28249146
Alignment:
Q  56 tactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| |||||||||||||||||| ||||||||    
T  28249055 tactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttctt 28249146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 31347508 - 31347378
Alignment:
Q  17 aaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaat 116  Q
    ||||||||||||| |||| ||||| | ||||||  |||||  |||||||||||||||||  |  |||||||||| |  | || |||||||||| ||||||    
T  31347508 aaatataaatatgtaacatttttttattgttacaaataatgatataaaatgttactgaagatggttagtaacacaggatttatctaacaattgatcaaat 31347409  T
Q  117 gttactaaatttaattagtaacttttttctt 147  Q
    |||||||||||||||||||| | ||||||||    
T  31347408 gttactaaatttaattagtagcatttttctt 31347378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 25637788 - 25637673
Alignment:
Q  31 aacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaa 130  Q
    |||| ||||||| ||||||  ||||||||||||||||| ||| ||| | ||||||||||||| || ||||||||||||| || | |||| ||||||||||    
T  25637788 aacactttttaattgttaca-ataatactataaaatgtaactaaaattctttagtaacacgggctttacctaacaattgttcgagtgttgctaaatttaa 25637690  T
Q  131 ttagtaacttttttctt 147  Q
    ||||||||  |||||||    
T  25637689 ttagtaacagttttctt 25637673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 17634439 - 17634542
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    |||||| |||| ||||||||||||| ||| ||  | ||||||||||||| || |||||| |||||| |||| ||||| ||||||||||||||||| ||||    
T  17634439 tgttacagatagtactataaaatgtaactaaatttctttagtaacacgggctttacctatcaattgttcaagtgttattaaatttaattagtaacatttt 17634538  T
Q  144 tctt 147  Q
    ||||    
T  17634539 tctt 17634542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 25638939 - 25638836
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    |||||| |||| ||||||||||||| ||| ||||  |||||||||| ||  | ||||||||||||| |||| |||| |||||||||||||||||| ||||    
T  25638939 tgttacggatagtactataaaatgtaactaaaacactttagtaacatgggttttacctaacaattgttcaagtgttgctaaatttaattagtaacatttt 25638840  T
Q  144 tctt 147  Q
    ||||    
T  25638839 tctt 25638836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 29553728 - 29553658
Alignment:
Q  77 ctttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    |||||||||||||||  || || |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  29553728 ctttttagtaacacgcgctttaactaacaattgctcaaatgttgctaaatttaattagtaacatttttctt 29553658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 6223541 - 6223434
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||| ||||||||  |||||| |||||| ||| ||| ||||| ||||||||||||  || ||||||||||||   |||||||||||||||||||| |||    
T  6223541 tttttgaatgttacatataatattataaagtgtaactaaaactctttagtaacacgcgctttacctaacaattttacaaatgttactaaatttaatcagt 6223442  T
Q  136 aacttttt 143  Q
    ||| ||||    
T  6223441 aacgtttt 6223434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 138
Target Start/End: Complemental strand, 5000811 - 5000717
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 138  Q
    ||||||||||||||||||||  | |||||  | || ||||||||||| |  |  ||||||| |||||||||||||||||||||||||||||||||    
T  5000811 tgttactgataatactataacgtcttactctagctctttagtaacacaggtttcacctaactattgctcaaatgttactaaatttaattagtaac 5000717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 5650911 - 5651016
Alignment:
Q  42 aatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttt 141  Q
    |||||||  |||||||| ||||||||  ||| || |||||| |||||| ||  | ||||||||||||| ||||||||| ||||||| |||||||||| ||    
T  5650911 aatgttatagataataccataaaatgcaactaaagcttttttgtaacaagggttttacctaacaattgttcaaatgttgctaaattgaattagtaacatt 5651010  T
Q  142 tttctt 147  Q
    ||||||    
T  5651011 tttctt 5651016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 29345556 - 29345460
Alignment:
Q  52 ataatactataaaatgttactgaaactt-tttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    ||||||||||||||||| ||| ||  || |||||||| | || || ||||||||||||| ||||| |||||||||||||||||||||  ||||||||    
T  29345556 ataatactataaaatgtaactaaagtttgtttagtaagaggggctttacctaacaattgttcaaaggttactaaatttaattagtaatatttttctt 29345460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 18767041 - 18766946
Alignment:
Q  52 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    ||||||||||||||||| ||| ||||| |||||||||||| ||| ||||||||||||| |  | |||| | ||||||||||| |||  ||||||||    
T  18767041 ataatactataaaatgtaactaaaactctttagtaacacgtactttacctaacaattgtttgagtgttgcaaaatttaattaataatatttttctt 18766946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 14997761 - 14997650
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||| |||||||| | ||||||||||||| || ||| || || |||||||||| ||  | ||||||||||||   ||||||||||||| |||||  |||    
T  14997761 tttttgaatgttacagttaatactataaaaggtaactaaagctctttagtaacatgggttttacctaacaattctacaaatgttactaattttaaccagt 14997662  T
Q  136 aacttttttctt 147  Q
    ||| ||||||||    
T  14997661 aacatttttctt 14997650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 31369080 - 31369168
Alignment:
Q  50 tgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 138  Q
    ||||||| ||||||||||| ||||||||| ||||||||||    || ||| ||||| ||| | |||||| |||||| ||||||||||||    
T  31369080 tgataatcctataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaac 31369168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 48465532 - 48465459
Alignment:
Q  17 aaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 90  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48465532 aaatataaatatgtaactgtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 48465459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 24558936 - 24559066
Alignment:
Q  17 aaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaat 116  Q
    ||||||||| | | |||| ||| | ||||||||||||||||||||||||| | ||| ||| | ||||||||||| | |  ||||||||||| | ||||||    
T  24558936 aaatataaacaagtaacaatttatgaatgttactgataatactataaaatatcactaaaattctttagtaacacagccgttacctaacaatcgttcaaat 24559035  T
Q  117 gttactaaatttaattagtaacttttttctt 147  Q
    |||||||||||||||||||||| ||||||||    
T  24559036 gttactaaatttaattagtaacatttttctt 24559066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 1684912 - 1685023
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| |||||| |||||||||||||| ||| ||| ||||| |||||||||||||||| || |||||||||| || | |||| | |||||||||||||    
T  1684912 tttttaattgttacagataatactataaattgtaactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagt 1685011  T
Q  136 aacttttttctt 147  Q
    ||| ||||||||    
T  1685012 aacatttttctt 1685023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 43600399 - 43600296
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    |||||| |||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| | || |||||||||||||||||| ||||    
T  43600399 tgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagttttgctaaatttaattagtaacatttt 43600300  T
Q  144 tctt 147  Q
    ||||    
T  43600299 tctt 43600296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 47066002 - 47066105
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    |||||| |||| ||||||||||||| ||| ||||| ||| ||||||||| || ||||||||||||| |||  |||||||||||||||||| |||| ||||    
T  47066002 tgttacggatagtactataaaatgtaactaaaactctttggtaacacgggctttacctaacaattgttcaggtgttactaaatttaattactaacatttt 47066101  T
Q  144 tctt 147  Q
    ||||    
T  47066102 tctt 47066105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 1152184 - 1152073
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| |||||| ||||||| |||||| ||| ||| ||||| |||||||||||||||| || |||||||||| |  | |||| | |||||||||||||    
T  1152184 tttttaattgttacagataatattataaactgtaactaaaactctttagtaacacggactttatctaacaattgtttgagtgttgcaaaatttaattagt 1152085  T
Q  136 aacttttttctt 147  Q
    ||| ||||||||    
T  1152084 aacatttttctt 1152073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 21317583 - 21317485
Alignment:
Q  31 aacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaattta 129  Q
    |||| ||||| ||||||| || |||||| ||||||||||| |||| | |||||||||||| | || ||||||||||||| | |||||||||||||||||    
T  21317583 aacactttttgaatgttattggtaatacaataaaatgttagtgaagcattttagtaacacagcctttacctaacaattgttgaaatgttactaaattta 21317485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 53300483 - 53300380
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    |||||| |||| ||| ||||||||| ||| ||||| ||| ||||||||| || ||||||||||||| | |  |||||||||||||||||| |||| ||||    
T  53300483 tgttacggatagtacgataaaatgtaactaaaactctttggtaacacgggctttacctaacaattgtttaggtgttactaaatttaattactaacatttt 53300384  T
Q  144 tctt 147  Q
    ||||    
T  53300383 tctt 53300380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 37750965 - 37751058
Alignment:
Q  51 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaactttttt 144  Q
    |||||||||||||||||| ||| || ||| |||||||||  | || || ||||||||||| ||||||||||| | ||||||||||||| |||||    
T  37750965 gataatactataaaatgtaactaaagcttcttagtaacattggctttatctaacaattgcgcaaatgttactgattttaattagtaacattttt 37751058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 51 - 143
Target Start/End: Original strand, 21539247 - 21539338
Alignment:
Q  51 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    |||||||||| ||||||| ||| || || |||||||||| ||||| || |||||||||| | ||||||||||||||||||| |||||| ||||    
T  21539247 gataatactaaaaaatgtaactaaatctctttagtaacaaggact-tatctaacaattgtttaaatgttactaaatttaatcagtaacatttt 21539338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 4881073 - 4881140
Alignment:
Q  80 tttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    |||||||||||||||| ||||||||||||   ||||| |||||||||||||| |||||| ||||||||    
T  4881073 tttagtaacacggactttacctaacaattatacaaatattactaaatttaatcagtaacatttttctt 4881140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 48464118 - 48464067
Alignment:
Q  98 acctaacaattgctcaaatgttactaaatttaattagtaacttttttcttta 149  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||| ||||    
T  48464118 acctaacaattgttcaaatgttactaaatttaattagtaacatttttattta 48464067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 4904144 - 4904209
Alignment:
Q  80 tttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttc 145  Q
    |||||||||| |  || |||||||||||||  |||||||||||||||||||| |||||| ||||||    
T  4904144 tttagtaacaagtgctttacctaacaattgtacaaatgttactaaatttaatcagtaacatttttc 4904209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 45641809 - 45641682
Alignment:
Q  17 aaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaat 116  Q
    |||| |||||| | |||| ||||||||||||||| ||||| ||| ||||||||||| ||||| || | ||||||  ||  |  ||| ||||||  |||||    
T  45641809 aaatgtaaataagtaacaatttttaaatgttactaataatgcta-aaaatgttactaaaactcttaaataacacacaccttcactagcaattgtgcaaat 45641711  T
Q  117 gttactaaatttaattagtaacttttttc 145  Q
    ||||||| || ||||||||||| ||||||    
T  45641710 gttactagatataattagtaacatttttc 45641682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 12190085 - 12189981
Alignment:
Q  43 atgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaactttt 142  Q
    |||||||| ||||||||||||||  ||||| ||||| ||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||  |||    
T  12190085 atgttactaataatactataaaaaattactaaaactctttagtaacacgggctttacctaacaattgttcaaatgttactaaatttaattagtaatattt 12189986  T
Q  143 ttctt 147  Q
    |||||    
T  12189985 ttctt 12189981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 51758898 - 51758782
Alignment:
Q  31 aacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaa 130  Q
    |||| ||||||| |||||| |||||||||||||||||| ||| ||||| |||||||| |||  || ||||||| ||||| || | |||| ||||||||||    
T  51758898 aacactttttaattgttacagataatactataaaatgtaactaaaactctttagtaatacgagctttacctaataattgttcgagtgttgctaaatttaa 51758799  T
Q  131 ttagtaacttttttctt 147  Q
    ||| |||| ||||||||    
T  51758798 ttactaacatttttctt 51758782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 3399740 - 3399653
Alignment:
Q  58 ctataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttc 145  Q
    ||||||| |||||| ||| || ||||||||||  || | ||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  3399740 ctataaagtgttaccgaagctatttagtaacatagattttacctaacaattgttcaaatgttactaaatttaattagtaacatttttc 3399653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 28637028 - 28636932
Alignment:
Q  51 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    |||| ||||||||||||| ||| || || ||||| ||||  |||| ||||||||||||  ||||||||||||||||| |||||||||| ||||||||    
T  28637028 gatattactataaaatgtaactaaatctctttagcaacagtgactttacctaacaattattcaaatgttactaaattgaattagtaacatttttctt 28636932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 39368599 - 39368711
Alignment:
Q  36 tttttaaatgttactgataatactat-aaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattag 134  Q
    |||||||||||||||||||||||||| ||||||| |||||| || ||||||| || |  || | |||||||||||   |||||| ||||| |||||||||    
T  39368599 tttttaaatgttactgataatactataaaaatgtaactgaagctctttagtagcatgtgctttgcctaacaattgtataaatgtgactaattttaattag 39368698  T
Q  135 taacttttttctt 147  Q
    |||| ||||||||    
T  39368699 taacatttttctt 39368711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 16222880 - 16222807
Alignment:
Q  74 aaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    ||||| ||||||||||||| || ||||||||||||  |||| ||||||||||||| ||||||||| ||||||||    
T  16222880 aaactctttagtaacacgggctttacctaacaattattcaagtgttactaaattttattagtaacatttttctt 16222807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 897594 - 897484
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||| ||||||||  |||||  |||||||||| |||  | || |||||||||| | ||| ||||||||||||| |||| |||||||||||||||||||     
T  897594 ttttttaatgttacaaataattgtataaaatgtaactatagctctttagtaacatgaact-tacctaacaattgttcaattgttactaaatttaattagg 897496  T
Q  136 aacttttttctt 147  Q
    ||| ||||||||    
T  897495 aacatttttctt 897484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 1844084 - 1843981
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    |||||| |||||||||||||||||  | | || |  || ||||||| ||  | ||||||||||||| ||||||||||||||||| ||| |||||| ||||    
T  1844084 tgttacagataatactataaaatgcaattaaagcccttcagtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaacatttt 1843985  T
Q  144 tctt 147  Q
    ||||    
T  1843984 tctt 1843981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 13208708 - 13208641
Alignment:
Q  80 tttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    |||||||||||||  | ||||||||||| | |||| || |||||||||||||||||||| ||||||||    
T  13208708 tttagtaacacgggttttacctaacaatggttcaagtggtactaaatttaattagtaacatttttctt 13208641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 5911685 - 5911735
Alignment:
Q  97 tacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    ||||||||||||| |||| |||||||||||||||| |||||| ||||||||    
T  5911685 tacctaacaattgttcaagtgttactaaatttaatcagtaacatttttctt 5911735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 15214415 - 15214356
Alignment:
Q  88 cacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    |||| ||| |||| |||||||| |||||| ||||||||||||||||||||  ||||||||    
T  15214415 cacgaactttacccaacaattgttcaaatattactaaatttaattagtaaaatttttctt 15214356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 15204673 - 15204623
Alignment:
Q  97 tacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    ||||||||||||| |||| |||||||||||||| |||| ||| ||||||||    
T  15204673 tacctaacaattgttcaagtgttactaaatttagttagcaacatttttctt 15204623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 4485506 - 4485625
Alignment:
Q  17 aaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaat 116  Q
    ||||||||||||| |||| ||||| ||||||||| ||||| ||||| | ||||||| ||||| |||| ||||||||||| ||||||||||||  ||||||    
T  4485506 aaatataaatatgcaacatttttttaatgttactaataattctatagattgttactaaaactatttaataacacggactttacctaacaattattcaaat 4485605  T
Q  117 gttactaaatttaattagta 136  Q
     |||||||||||||||||||    
T  4485606 attactaaatttaattagta 4485625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 16734937 - 16734834
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    |||||| |||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||| ||||    
T  16734937 tgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaaatgttgctaaatttaattagtaacatttt 16734838  T
Q  144 tctt 147  Q
    ||||    
T  16734837 tctt 16734834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 23264437 - 23264567
Alignment:
Q  17 aaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaat 116  Q
    ||||| ||||| | |||| ||||| | |||| |||||||||||||||| | || ||||| || |||||||||||||| | ||||||||||||| || |||    
T  23264437 aaatacaaataagtaacatttttttagtgtttctgataatactataaagttttgctgaagctctttagtaacacggattttacctaacaattgttcgaat 23264536  T
Q  117 gttactaaatttaattagtaacttttttctt 147  Q
    ||||||||||||||||||||||  |||||||    
T  23264537 gttactaaatttaattagtaacaattttctt 23264567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 15361860 - 15361744
Alignment:
Q  31 aacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaa 130  Q
    |||| ||||| | |||||| |||| ||||||||||||| ||| |||| |||||||||||| | || ||||||||||||| |||| |||| ||||||||||    
T  15361860 aacactttttgattgttacagatagtactataaaatgtaactaaaacattttagtaacaccggctttacctaacaattgttcaagtgttgctaaatttaa 15361761  T
Q  131 ttagtaacttttttctt 147  Q
    |||||||| ||||||||    
T  15361760 ttagtaacatttttctt 15361744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 12591973 - 12591862
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| |||||| |||||||||||||| ||| ||| ||||| ||||||||||||| || ||||||||||||| || |  ||||||||||||||||| |    
T  12591973 tttttaattgttacagataatactataaattgtaactaaaactctttagtaacacgggctttacctaacaattgttcgagcgttactaaatttaattact 12591874  T
Q  136 aacttttttctt 147  Q
    ||| ||||||||    
T  12591873 aacatttttctt 12591862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 14669306 - 14669417
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| ||||||  ||||||||||||||||| ||| ||||| |||||||||||||||| ||||||||||||  || | |||| | |||||||||||||    
T  14669306 tttttaattgttacaaataatactataaaatgtaactaaaactctttagtaacacggactttacctaacaattattcgagtgttgcaaaatttaattagt 14669405  T
Q  136 aacttttttctt 147  Q
    ||| ||||||||    
T  14669406 aacatttttctt 14669417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 6684218 - 6684123
Alignment:
Q  51 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    |||||||||||||||||| ||| ||||| |||||||||| ||||| |||||||||| || || | ||||||||||||||||||||||| ||||||||    
T  6684218 gataatactataaaatgtaactaaaactctttagtaacatggactttacctaacaa-tgttcgagtgttactaaatttaattagtaacatttttctt 6684123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 11936735 - 11936838
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    |||||| |||| ||||||||||||| ||| ||||  ||||||||||||| || || |||||||||| |||| |||| |||||||||||||||||| ||||    
T  11936735 tgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttt 11936834  T
Q  144 tctt 147  Q
    ||||    
T  11936835 tctt 11936838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 11948715 - 11948818
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    |||||| |||| ||||||||||||| ||| ||||  ||||||||||||| || || |||||||||| |||| |||| |||||||||||||||||| ||||    
T  11948715 tgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttt 11948814  T
Q  144 tctt 147  Q
    ||||    
T  11948815 tctt 11948818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 17719683 - 17719794
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| |||||| |||||||||||||| ||| ||| ||||| |||||||||||||||| || |||||||||| || | |||| | ||| |||||||||    
T  17719683 tttttaattgttacagataatactataaattgtaactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaaattaattagt 17719782  T
Q  136 aacttttttctt 147  Q
    ||| ||||||||    
T  17719783 aacatttttctt 17719794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 29667899 - 29667987
Alignment:
Q  60 ataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttcttt 148  Q
    ||||||||||||| || || |||| ||||||   || ||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  29667899 ataaaatgttactaaatctctttaataacacaagctttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttt 29667987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 34374961 - 34374854
Alignment:
Q  42 aatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaa--ttgctcaaatgttactaaatttaattagtaact 139  Q
    ||||||||| ||||||||||||||| ||||| ||||| ||||||||||| || | | ||||||||  ||| ||||||||||| |||| |||||||||||     
T  34374961 aatgttactcataatactataaaatattactcaaactctttagtaacacagattttgcctaacaattttgttcaaatgttacaaaatataattagtaaca 34374862  T
Q  140 tttttctt 147  Q
    ||||||||    
T  34374861 tttttctt 34374854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 9631123 - 9631226
Alignment:
Q  45 gttactgataatactataaaa-tgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    ||||| ||||||||| ||||| ||| ||| ||||| | |||||||| || |||| ||||||||||| ||||||||||||||||||| |||||||| || |    
T  9631123 gttacagataatactctaaaaatgtaactaaaactctatagtaacaggggctatgcctaacaattgttcaaatgttactaaatttacttagtaacgttct 9631222  T
Q  144 tctt 147  Q
    ||||    
T  9631223 tctt 9631226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 10070778 - 10070693
Alignment:
Q  52 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 138  Q
    ||||||||||||||||| ||| |||||||| ||||||||||||| ||| ||||||||  |  | ||||| |||||||||||||||||    
T  10070778 ataatactataaaatgtaactaaaactttt-agtaacacggactttacgtaacaattatttgagtgttattaaatttaattagtaac 10070693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 23904373 - 23904423
Alignment:
Q  97 tacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||||||    
T  23904373 tacctaacaattgttcaaatgttactaaattgatttagtaacttttttctt 23904423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 2941108 - 2941044
Alignment:
Q  74 aaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 138  Q
    |||| ||||||||||||  ||| ||||||||| |||||||||||||||||||  |||||||||||    
T  2941108 aaacattttagtaacacaaactttacctaacatttgctcaaatgttactaaacataattagtaac 2941044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 7601321 - 7601395
Alignment:
Q  63 aaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 138  Q
    ||||||||||||||   |||||||||||||||| ||||||||| ||| ||||||||||| | || ||| |||||||    
T  7601321 aaatgttactgaaatcatttagtaacacggactttacctaacatttg-tcaaatgttacaagatctaaatagtaac 7601395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 10935802 - 10935850
Alignment:
Q  97 tacctaacaattgctcaaatgttactaaatttaattagtaacttttttc 145  Q
    ||||||||||||| ||||||||||||  || ||||||||||| ||||||    
T  10935802 tacctaacaattgttcaaatgttactggatataattagtaacatttttc 10935850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 6844 - 6728
Alignment:
Q  31 aacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaa 130  Q
    |||| ||||| | |||||| |||| ||||||||||||| ||| |||| |||||||||||| | || ||||||||||||| |||| |||| ||||||||||    
T  6844 aacactttttgattgttacagatagtactataaaatgtaactaaaacattttagtaacaccggctttacctaacaattgttcaagtgttgctaaatttaa 6745  T
Q  131 ttagtaacttttttctt 147  Q
    |||||||| ||||||||    
T  6744 ttagtaacatttttctt 6728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 9242444 - 9242555
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| |||||  |||||||||||||||||| ||| ||||| |||||||||| ||||| || |||||||||| |||| |||||| |||||||||||||    
T  9242444 tttttaattgttatagataatactataaaatgtaactaaaactctttagtaacatggactttatctaacaattgttcaagtgttacaaaatttaattagt 9242543  T
Q  136 aacttttttctt 147  Q
    |||  |||||||    
T  9242544 aacaattttctt 9242555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 4685371 - 4685474
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    |||||| |||| ||||||||||||| ||| ||||  |||||||| |||| || ||||||||||||| |||| |||| ||||||||||||| |||| ||||    
T  4685371 tgttacagatagtactataaaatgtaactaaaacactttagtaatacgggctttacctaacaattgttcaagtgttgctaaatttaattactaacatttt 4685470  T
Q  144 tctt 147  Q
    ||||    
T  4685471 tctt 4685474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 26621051 - 26621162
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||| |||||||| |||||||||||||||||| ||| || || |||||||||| ||  | || |||||||||| | ||||||| ||||||||||| |||    
T  26621051 tttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacatggcttttatctaacaattgtttaaatgttgctaaatttaatcagt 26621150  T
Q  136 aacttttttctt 147  Q
    ||| ||||||||    
T  26621151 aacatttttctt 26621162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 30089859 - 30089764
Alignment:
Q  52 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    ||||||||||||||||| ||| || || |||||||||| || || | ||||||||||| |||||||||||||||| |||| |||||| ||||||||    
T  30089859 ataatactataaaatgtaactaaagctctttagtaacatgggcttttcctaacaattgttcaaatgttactaaatataatcagtaacatttttctt 30089764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 3234467 - 3234354
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaa-caattgctcaaatgttactaaatttaattag 134  Q
    ||||| ||||||||| ||||||| || ||||||||||||| || |||||||||||||||| |||||||  ||||| ||||||||||||||||| | ||||    
T  3234467 tttttgaatgttactaataatac-attaaatgttactgaagctatttagtaacacggactttacctaataaattggtcaaatgttactaaattaatttag 3234369  T
Q  135 taacttttttcttta 149  Q
    || | ||||| ||||    
T  3234368 taccattttttttta 3234354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 16086611 - 16086525
Alignment:
Q  52 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 138  Q
    |||||||||||||||||||||||| || || ||||||| |  || ||||||||||||  |||||||||| |||||||||||||||||    
T  16086611 ataatactataaaatgttactgaagctattaagtaacatgagctttacctaacaattattcaaatgttattaaatttaattagtaac 16086525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 10022264 - 10022156
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| |||||| |||| || |||||||||| ||| ||| | ||||||||||||  || ||||||||||||| |||  |||||||||| |||||||||    
T  10022264 tttttaattgttacagatagtaatataaaatgtaactaaaattctttagtaacacgagctttacctaacaattgttcatgtgttactaaacttaattagt 10022165  T
Q  136 aactttttt 144  Q
    ||| |||||    
T  10022164 aacattttt 10022156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 26608514 - 26608610
Alignment:
Q  51 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    |||| ||||||||||||  ||| || || |||||||||| || || || |||||||||| ||||||||||||||||||||| |||||| ||||||||    
T  26608514 gatagtactataaaatgcaactaaagctctttagtaacatgggctttatctaacaattgttcaaatgttactaaatttaatcagtaacatttttctt 26608610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 26701189 - 26701083
Alignment:
Q  17 aaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaat 116  Q
    ||||||||||||| |||| ||| | ||||||||| ||||||| ||||| ||||||||||  | ||||||||||||| || |||||||||||||  ||| |    
T  26701189 aaatataaatatgcaacattttctgaatgttactaataatac-ataaagtgttactgaagttatttagtaacacgggctttacctaacaattggccaact 26701091  T
Q  117 gttactaa 124  Q
    ||||||||    
T  26701090 gttactaa 26701083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 20277328 - 20277417
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaatta 133  Q
    |||||| |||||||||||| ||||| ||| || || |||||||||| |  || ||||||||||||| | |||||||||||||||||||||    
T  20277328 tgttacagataatactatataatgtaactaaagctctttagtaacaggtgctttacctaacaattgtttaaatgttactaaatttaatta 20277417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 26224961 - 26225049
Alignment:
Q  59 tataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    |||||||||  ||| ||||| ||||||||||| | || ||||||| ||||| |||| ||||||||||||||||||||| | ||||||||    
T  26224961 tataaaatgaaactaaaactctttagtaacaccggctttacctaataattgttcaagtgttactaaatttaattagtatcatttttctt 26225049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 27136061 - 27135957
Alignment:
Q  44 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 143  Q
    ||||||| ||||||| | ||| |||||| |||||| ||||||||||| | || || |||||||||| |||||||||| || || |||| | |||| ||||    
T  27136061 tgttactaataataccaaaaactgttaccgaaactctttagtaacacaggctttatctaacaattgttcaaatgttattagatataatcaataacatttt 27135962  T
Q  144 tcttt 148  Q
    |||||    
T  27135961 tcttt 27135957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 26205395 - 26205486
Alignment:
Q  56 tactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 147  Q
    |||||| |||||  ||| ||||| |||||||||||   || |||||| |||||  |||| ||||||||||||||||||||||| ||||||||    
T  26205395 tactatcaaatgaaactaaaactctttagtaacaccagctttacctaccaatttttcaagtgttactaaatttaattagtaacatttttctt 26205486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 16170350 - 16170309
Alignment:
Q  97 tacctaacaattgctcaaatgttactaaatttaattagtaac 138  Q
    ||||||||||||| | || |||||||||||||||||||||||    
T  16170350 tacctaacaattgtttaagtgttactaaatttaattagtaac 16170309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 40658 - 40769
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| |||||| |||||||||||||||||| ||| ||||| |||||||||| ||||| || |||||||||| || | |||| | |||||||||||||    
T  40658 tttttaattgttacagataatactataaaatgtaactaaaactctttagtaacatggactttatctaacaattgttcgagtgttgcaaaatttaattagt 40757  T
Q  136 aacttttttctt 147  Q
    |||  |||||||    
T  40758 aacaattttctt 40769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 707 - 818
Alignment:
Q  36 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 135  Q
    ||||||| |||||  |||||||||||||||||| ||| ||||| |||||||||| ||||| || |||||||||| || | |||| | |||||||||||||    
T  707 tttttaattgttatagataatactataaaatgtaactaaaactctttagtaacatggactttatctaacaattgttcgagtgttgcaaaatttaattagt 806  T
Q  136 aacttttttctt 147  Q
    |||  |||||||    
T  807 aacaattttctt 818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 446224 - 446345
Alignment:
Q  17 aaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaat 116  Q
    ||||| ||||| | |||| ||||| |||||||||  || ||||||||| ||||||| || || |||||||| | ||||| | ||||||||||| ||||||    
T  446224 aaatacaaataggtaacatttttttaatgttactactactactataaagtgttactaaagctctttagtaatatggacttttcctaacaattgttcaaat 446323  T
Q  117 gttactaaatttaattagtaac 138  Q
    ||||| |||||||||| |||||    
T  446324 gttaccaaatttaattggtaac 446345  T

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