View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7458_high_4 (Length: 418)
Name: NF7458_high_4
Description: NF7458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7458_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Original strand, 15797258 - 15797652
Alignment:
| Q |
16 |
cattttattggtacaagaatcccatgttagctggacatgtttcagaagaaatggatataggactaattgagtttaccaatcttgcttggattttgttatg |
115 |
Q |
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| T |
15797258 |
cattttattggtacaagaatcccaagttagctggacatgtttcagaagaaatggatataggactaattgagtttaccaatcttgcttggattttgttatg |
15797357 |
T |
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| Q |
116 |
tgcaatgagactgccttattagtgacaacttacgaacaaagcattggaattggacactcagaattttattgcttaatacaacaaaagatgcct-----tt |
210 |
Q |
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| T |
15797358 |
tgcaatgagactgcctttttagtgacaacttacgaacaaagcattggaattggacactcagaattttattccttaatacaacaaaagatgccttttaatt |
15797457 |
T |
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| Q |
211 |
tatctcctatgaacttctgctgcaaattatttatc-ttttgttagtctattgcgttttactttgtcaggaattttttctgtacatggaaacagtgccaca |
309 |
Q |
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| T |
15797458 |
tatctcctatgaacttctgctgcaaattatttgtctttttgttagtctattgcgttttactttgtcaggaattttttctgtacatggaaacagtgccaca |
15797557 |
T |
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| Q |
310 |
atgccaacacattcttcttcggcacaaacattaacctcactgagtgtttgaattagcttgctcttaagataatgatttccttttgttttattgat |
404 |
Q |
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| T |
15797558 |
atgccaacacattcttctttggcacaaacattaacctcactgaatgtttgaattagcttgctcttaagataatgatttccttttgttttattgat |
15797652 |
T |
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