View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7458_high_5 (Length: 241)
Name: NF7458_high_5
Description: NF7458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7458_high_5 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 15656224 - 15656446
Alignment:
| Q |
1 |
tttgtttgctgagcatattgctaaattgcattgaaactgttataaaggatactagagttcaaagtataagtgctcttcaaatttatattatggtcctttt |
100 |
Q |
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| T |
15656224 |
tttgtttgctgagcatattgctaaattgcattgaaactgttataaaggatactagagttcaaagtataagtgctcttcaaatttatattatggtcttttt |
15656323 |
T |
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| Q |
101 |
aaggtgctgcttctgctttcttgttaacccaggaataaaagcgacttccgcagcttttttatcatactccttaactctgcgccataattccaggtcatgc |
200 |
Q |
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| T |
15656324 |
aaggtgctgcttctgctttcttgttaacacaagaataaaagcgacttccgcagcttttttatcatactccttaactctgcgcaataattccaggtcatgc |
15656423 |
T |
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| Q |
201 |
tgaattctatagctattgtgaac |
223 |
Q |
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| T |
15656424 |
tgaattctagagctattgtgaac |
15656446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 15644575 - 15644663
Alignment:
| Q |
1 |
tttgtttgctgagcatattgctaaattgcattgaaactgttataaaggatactagagttcaaagtataagtgctcttcaaatttatatt |
89 |
Q |
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| T |
15644575 |
tttgtttgctgagcatattgctaaattgcattgaaactgttatagaggatactagagttcaaagtataagtgctcttcaaatttatatt |
15644663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 15620806 - 15620894
Alignment:
| Q |
1 |
tttgtttgctgagcatattgctaaattgcattgaaactgttataaaggatactagagttcaaagtataagtgctcttcaaatttatatt |
89 |
Q |
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| T |
15620806 |
tttgtttgctgagcgtattgctaaattgcattgaaactgttatagaggatactagagttcaaagtataagtgctcttcaaatttatatt |
15620894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 16641744 - 16641699
Alignment:
| Q |
16 |
tattgctaaattgcattgaaactgttataaaggatactagagttca |
61 |
Q |
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| T |
16641744 |
tattgctgaattgcattgaaactgttatacaggtttctagagttca |
16641699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 97 - 209
Target Start/End: Complemental strand, 17636501 - 17636389
Alignment:
| Q |
97 |
ttttaaggtgctgcttctgctttcttgttaacccaggaataaaagcgacttccgcagcttttttatcatactccttaactctgcgccataattccaggtc |
196 |
Q |
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| T |
17636501 |
ttttaaggtgcttcttctgctttcttgttaacataggaataaaagggacttccgcagctttttgatcatactccttaactctacgccataattccaggtc |
17636402 |
T |
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| Q |
197 |
atgctgaattcta |
209 |
Q |
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| T |
17636401 |
atgctgaattcta |
17636389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 3914833 - 3914952
Alignment:
| Q |
90 |
atggtccttttaaggtgctgcttctgctttcttgttaacccaggaataaaagcgacttccgcagcttttttatcatactccttaactctgcgccataatt |
189 |
Q |
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|||||| ||||||||||||||||| |||| ||||||||| || ||||||||| ||||||| || | |||| |||||||||||||||| |||||||||||| |
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| T |
3914833 |
atggtctttttaaggtgctgcttcagcttccttgttaacacatgaataaaagggacttccacaacattttgatcatactccttaactttgcgccataatt |
3914932 |
T |
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| Q |
190 |
ccaggtcatgctgaattcta |
209 |
Q |
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| T |
3914933 |
ccaggtcatgttgaattcta |
3914952 |
T |
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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 139446 - 139510
Alignment:
| Q |
145 |
cttccgcagcttttttatcatactccttaactctgcgccataattccaggtcatgctgaattcta |
209 |
Q |
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| T |
139446 |
cttcggcagcctttttatcatactctttaacgcggcaccataattccaagtcctgctggattcta |
139510 |
T |
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