View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7458_low_1 (Length: 520)
Name: NF7458_low_1
Description: NF7458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7458_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 417
Target Start/End: Complemental strand, 40039765 - 40039374
Alignment:
| Q |
19 |
cggttattggtggaaagtttgtgaagacagcgaagttcgtatatttaagtggtttggaagaaaatatatccgctaagggaaaaatataagactacatcat |
118 |
Q |
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| T |
40039765 |
cggttattggtggaaagtttgtgaagacagcgaagttcgtatatataagtggtttggaagaaaatatatccgctaagggaaaaatataagactacatcat |
40039666 |
T |
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| Q |
119 |
atcagaaagggtattcatcatccaaacttttaattgtgnnnnnnnnnnngtaacatagacctctgaattgtaaataaaaactctagagtcctattatgga |
218 |
Q |
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| T |
40039665 |
--cagaaagggtactcattatccaaacttttaattgtgtttatttt---gtaacatagacctctgaattgtaaataaaaactctagagtcctattaagga |
40039571 |
T |
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| Q |
219 |
tagcagagtgtattatgagtgtaatttgaagtagnnnnnnntttaatgtctcgtatcttttagtttacacaccttattagttttcaacatcatataagtg |
318 |
Q |
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| T |
40039570 |
tagcagagtgtattatgagtgtaatttgaagtagaaaaaagtt-aatgtctcgtatcttttagtttacacaccttattacttttcaacatcatataagtg |
40039472 |
T |
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| Q |
319 |
gtcttttatcctcccttttctatacaccaagagttttattttgttaatagaaaactttttctcttctccctcttttgattcgacgcacttttgaattac |
417 |
Q |
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| T |
40039471 |
gtctttcatcctcccttttctatacaccaagagttttattctgtt-atagaaaactttctctcttctccctcttttgattcgacgcacttttgaattac |
40039374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 419 - 508
Target Start/End: Complemental strand, 40039349 - 40039260
Alignment:
| Q |
419 |
ataatttttcccttataggtaatttagtctcttcaaaataactgtcctttttaaaaaatttaatctctccaaagaaacgttgttcgttca |
508 |
Q |
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| T |
40039349 |
ataatttttcccttataagaaatttagtctcttcaaaataactgtcctttttaaaaaatttagtctctccaaagaaatgttgtccgttca |
40039260 |
T |
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