View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7458_low_11 (Length: 204)
Name: NF7458_low_11
Description: NF7458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7458_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 33126718 - 33126529
Alignment:
| Q |
1 |
tataattggacgagcttctaaatcaaagtcatttactaatgtagatgagcttgtcaactataacattttgtatgaaaaaatattttgtgattatatttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33126718 |
tataattggacgagcttctaaatcaaagtcatttactaatgtagatgagcttgtcaactataacattttgtatgaaaaaatattctgtgattatatttta |
33126619 |
T |
|
| Q |
101 |
tccagacattagattataaccatttgatattgatcattttattaacattaaactggataagtnnnnnnncatttgtgagtggttgtcact |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33126618 |
tccagacattagattataaccatttgatattgatcattttattaacattaaactggataagtaaaaaaacatttgtgagtggttgtcact |
33126529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University