View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7458_low_2 (Length: 499)

Name: NF7458_low_2
Description: NF7458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7458_low_2
NF7458_low_2
[»] chr3 (20 HSPs)
chr3 (1-481)||(47984708-47985183)
chr3 (1-481)||(47993995-47994470)
chr3 (1-481)||(48003282-48003757)
chr3 (1-481)||(48012568-48013042)
chr3 (120-226)||(51312422-51312529)
chr3 (55-114)||(43426897-43426956)
chr3 (11-56)||(16821207-16821252)
chr3 (55-114)||(14081353-14081413)
chr3 (55-106)||(39657401-39657453)
chr3 (11-58)||(13838962-13839009)
chr3 (11-58)||(15859172-15859219)
chr3 (4-55)||(15876128-15876179)
chr3 (1-60)||(33369039-33369098)
chr3 (11-58)||(51158166-51158213)
chr3 (4-58)||(16880183-16880237)
chr3 (11-52)||(12264940-12264981)
chr3 (55-114)||(11060317-11060377)
chr3 (55-114)||(25103347-25103406)
chr3 (55-91)||(30208055-30208091)
chr3 (55-114)||(40940003-40940063)
[»] chr6 (28 HSPs)
chr6 (366-481)||(23127114-23127229)
chr6 (393-473)||(5334555-5334635)
chr6 (410-475)||(5255865-5255930)
chr6 (360-475)||(5351832-5351946)
chr6 (410-475)||(5180533-5180598)
chr6 (55-114)||(32352828-32352888)
chr6 (346-432)||(5098646-5098732)
chr6 (434-475)||(5687573-5687614)
chr6 (6-58)||(29665936-29665988)
chr6 (55-114)||(33537697-33537757)
chr6 (358-449)||(5100521-5100612)
chr6 (366-449)||(5135630-5135713)
chr6 (360-460)||(5398509-5398604)
chr6 (4-58)||(18398998-18399052)
chr6 (12-58)||(27740907-27740953)
chr6 (64-114)||(31466926-31466976)
chr6 (55-106)||(17082517-17082569)
chr6 (55-106)||(18506725-18506777)
chr6 (4-60)||(25651297-25651353)
chr6 (55-114)||(25654991-25655051)
chr6 (419-481)||(5242214-5242276)
chr6 (4-58)||(22361898-22361952)
chr6 (392-460)||(5439519-5439587)
chr6 (55-98)||(15004290-15004334)
chr6 (55-106)||(21932039-21932091)
chr6 (55-114)||(22848868-22848928)
chr6 (14-58)||(23153518-23153562)
chr6 (4-52)||(25367376-25367424)
[»] chr4 (21 HSPs)
chr4 (1-58)||(15675237-15675294)
chr4 (1-56)||(31115687-31115742)
chr4 (4-58)||(10104398-10104452)
chr4 (4-58)||(40885702-40885756)
chr4 (11-56)||(10644287-10644332)
chr4 (55-114)||(7185196-7185256)
chr4 (55-114)||(13589454-13589514)
chr4 (55-106)||(15212953-15213005)
chr4 (4-60)||(18276494-18276550)
chr4 (55-114)||(30231833-30231893)
chr4 (55-114)||(41916129-41916189)
chr4 (55-114)||(49072519-49072579)
chr4 (11-58)||(13246498-13246545)
chr4 (4-58)||(15044888-15044942)
chr4 (4-58)||(15109482-15109536)
chr4 (11-52)||(8374576-8374617)
chr4 (11-52)||(17145804-17145845)
chr4 (11-52)||(18248286-18248327)
chr4 (1-58)||(54118392-54118449)
chr4 (55-114)||(27961830-27961890)
chr4 (4-52)||(52265647-52265695)
[»] chr2 (8 HSPs)
chr2 (1-58)||(24341537-24341594)
chr2 (1-54)||(36982593-36982646)
chr2 (11-58)||(462806-462853)
chr2 (11-58)||(8891310-8891357)
chr2 (11-58)||(19794852-19794899)
chr2 (58-114)||(9638237-9638294)
chr2 (4-60)||(23821736-23821792)
chr2 (4-60)||(23830815-23830871)
[»] chr5 (20 HSPs)
chr5 (1-58)||(18531215-18531272)
chr5 (1-58)||(22053981-22054038)
chr5 (55-114)||(3674743-3674803)
chr5 (55-114)||(37984224-37984284)
chr5 (114-244)||(31726664-31726796)
chr5 (11-52)||(4200128-4200169)
chr5 (55-114)||(11966135-11966195)
chr5 (4-52)||(21617076-21617124)
chr5 (11-58)||(27182695-27182742)
chr5 (4-58)||(7728480-7728534)
chr5 (4-58)||(23493979-23494033)
chr5 (11-52)||(11212212-11212253)
chr5 (58-114)||(21110579-21110636)
chr5 (1-58)||(23507023-23507080)
chr5 (11-52)||(35791246-35791287)
chr5 (4-52)||(432523-432571)
chr5 (4-60)||(21222739-21222795)
chr5 (55-114)||(23418100-23418160)
chr5 (55-114)||(23467312-23467372)
chr5 (55-114)||(26559182-26559244)
[»] scaffold0149 (1 HSPs)
scaffold0149 (55-114)||(32730-32790)
[»] scaffold0022 (1 HSPs)
scaffold0022 (55-114)||(67345-67405)
[»] scaffold0151 (1 HSPs)
scaffold0151 (1-60)||(22553-22612)
[»] chr7 (17 HSPs)
chr7 (1-58)||(13321072-13321130)
chr7 (55-114)||(33560474-33560534)
chr7 (11-54)||(13911166-13911209)
chr7 (4-60)||(9611367-9611423)
chr7 (55-114)||(9723187-9723247)
chr7 (4-60)||(9838939-9838995)
chr7 (4-60)||(16915059-16915115)
chr7 (55-114)||(45146191-45146251)
chr7 (57-112)||(45150392-45150448)
chr7 (11-58)||(11580887-11580934)
chr7 (11-58)||(47481179-47481226)
chr7 (4-58)||(13377589-13377643)
chr7 (55-114)||(14268233-14268294)
chr7 (11-55)||(3060034-3060078)
chr7 (55-114)||(13275633-13275693)
chr7 (55-114)||(20582941-20583001)
chr7 (4-52)||(48356704-48356752)
[»] chr1 (10 HSPs)
chr1 (55-113)||(25094689-25094747)
chr1 (57-114)||(19603971-19604029)
chr1 (1-58)||(37844599-37844656)
chr1 (55-114)||(16646792-16646852)
chr1 (1-60)||(17608985-17609044)
chr1 (60-114)||(18851777-18851831)
chr1 (57-114)||(22828752-22828810)
chr1 (4-58)||(37233993-37234047)
chr1 (57-114)||(38033010-38033068)
chr1 (175-244)||(944935-945004)
[»] scaffold0009 (1 HSPs)
scaffold0009 (4-60)||(69517-69573)
[»] chr8 (12 HSPs)
chr8 (4-60)||(5854674-5854730)
chr8 (57-114)||(33529287-33529345)
chr8 (4-58)||(38533709-38533763)
chr8 (11-56)||(30120790-30120835)
chr8 (55-103)||(17502988-17503036)
chr8 (55-114)||(27232426-27232485)
chr8 (11-52)||(16195298-16195339)
chr8 (11-52)||(22735977-22736018)
chr8 (55-103)||(23223338-23223387)
chr8 (58-114)||(45464490-45464547)
chr8 (4-52)||(15933358-15933406)
chr8 (55-114)||(18040918-18040978)
[»] scaffold0025 (2 HSPs)
scaffold0025 (11-58)||(8917-8964)
scaffold0025 (1-58)||(148779-148836)
[»] scaffold0008 (1 HSPs)
scaffold0008 (11-54)||(31817-31860)
[»] scaffold0529 (1 HSPs)
scaffold0529 (1-58)||(3020-3078)
[»] scaffold0075 (1 HSPs)
scaffold0075 (1-58)||(34608-34666)
[»] scaffold0195 (2 HSPs)
scaffold0195 (1-58)||(19264-19321)
scaffold0195 (1-58)||(21348-21405)
[»] scaffold0010 (1 HSPs)
scaffold0010 (4-60)||(31080-31136)
[»] scaffold0006 (1 HSPs)
scaffold0006 (4-52)||(197392-197440)
[»] scaffold1932 (1 HSPs)
scaffold1932 (55-114)||(734-793)
[»] scaffold0808 (1 HSPs)
scaffold0808 (55-98)||(1640-1683)
[»] scaffold0012 (1 HSPs)
scaffold0012 (11-58)||(247590-247637)
[»] scaffold0700 (1 HSPs)
scaffold0700 (4-58)||(2585-2639)
[»] scaffold0053 (1 HSPs)
scaffold0053 (4-58)||(76980-77034)
[»] scaffold0266 (1 HSPs)
scaffold0266 (1-58)||(1182-1239)
[»] scaffold0106 (1 HSPs)
scaffold0106 (13-58)||(41799-41844)
[»] scaffold0066 (2 HSPs)
scaffold0066 (11-52)||(45098-45139)
scaffold0066 (11-52)||(54484-54525)
[»] scaffold0023 (1 HSPs)
scaffold0023 (11-56)||(36161-36206)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-58)||(123312-123369)
[»] scaffold0406 (1 HSPs)
scaffold0406 (55-114)||(14841-14901)
[»] scaffold0342 (1 HSPs)
scaffold0342 (55-114)||(13146-13206)


Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 47984708 - 47985183
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcacatataaacacatattaaacaataaaaaataaatatagcgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47984708 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcacatataaacacatattaaacaataaaaaataaatatagcgga 47984807  T
Q  101 aatcggactgttacgctgttgatgacgacggtattgtgaggtgaaagctcaggaggttgtggttgtagagagacggtgatgactgtcgtggaggtcggtg 200  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47984808 aatcggactgttacactattgatgacgacggtattgtgaggtgaaagctcaggaggttgtggttgtagagagacggtgatgactgtcgtggaggttggtg 47984907  T
Q  201 agaggtggatatgagaagattgttggacggtggtggtggtggtgccggtgagagaatccaa-cacatatattcgacgaagatatttcaattaaaattcaa 299  Q
    ||||||||||||||||||||||||||||||||||||||      ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47984908 agaggtggatatgagaagattgttggacggtggtggtg------ccggtgagagaatccaaacacatatattcgacgaagatatttcaattaaaattcaa 47985001  T
Q  300 aattgagtacttctctctcaaagctgaaaataatgttagagtcacggccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatcttt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47985002 aattgagtacttctctctcaaagctgaaaataatgttagagtcacggccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatcttt 47985101  T
Q  400 cacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaat 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47985102 cacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaat 47985183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 47993995 - 47994470
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcacatataaacacatattaaacaataaaaaataaatatagcgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47993995 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcacatataaacacatattaaacaataaaaaataaatatagcgga 47994094  T
Q  101 aatcggactgttacgctgttgatgacgacggtattgtgaggtgaaagctcaggaggttgtggttgtagagagacggtgatgactgtcgtggaggtcggtg 200  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  47994095 aatcggactgttacactattgatgacgacggtattgtgaggtgaaagctcaggaggttgtggttgtagagagacggtgatgacggtcgtggaggtcggtg 47994194  T
Q  201 agaggtggatatgagaagattgttggacggtggtggtggtggtgccggtgagagaatccaa-cacatatattcgacgaagatatttcaattaaaattcaa 299  Q
    ||||||||||||||||||||||||||||||||||||||      ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47994195 agaggtggatatgagaagattgttggacggtggtggtg------ccggtgagagaatccaaacacatatattcgacgaagatatttcaattaaaattcaa 47994288  T
Q  300 aattgagtacttctctctcaaagctgaaaataatgttagagtcacggccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatcttt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994289 aattgagtacttctctctcaaagctgaaaataatgttagagtcacggccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatcttt 47994388  T
Q  400 cacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaat 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994389 cacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaat 47994470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 48003282 - 48003757
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcacatataaacacatattaaacaataaaaaataaatatagcgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48003282 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcacatataaacacatattaaacaataaaaaataaatatagcgga 48003381  T
Q  101 aatcggactgttacgctgttgatgacgacggtattgtgaggtgaaagctcaggaggttgtggttgtagagagacggtgatgactgtcgtggaggtcggtg 200  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48003382 aatcggactgttacactattgatgacgacggtattgtgaggtgaaagctcaggaggttgtggttgtagagagacggtgatgactgtcgtggaggttggtg 48003481  T
Q  201 agaggtggatatgagaagattgttggacggtggtggtggtggtgccggtgagagaatccaa-cacatatattcgacgaagatatttcaattaaaattcaa 299  Q
    ||||||||||||||||||||||||||||||||||||||      ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48003482 agaggtggatatgagaagattgttggacggtggtggtg------ccggtgagagaatccaaacacatatattcgacgaagatatttcaattaaaattcaa 48003575  T
Q  300 aattgagtacttctctctcaaagctgaaaataatgttagagtcacggccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatcttt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48003576 aattgagtacttctctctcaaagctgaaaataatgttagagtcacggccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatcttt 48003675  T
Q  400 cacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaat 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48003676 cacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaat 48003757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 48012568 - 48013042
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcacatataaacacatattaaacaataaaaaataaatatagcgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48012568 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcacatataaacacatattaaacaataaaaaataaatatagcgga 48012667  T
Q  101 aatcggactgttacgctgttgatgacgacggtattgtgaggtgaaagctcaggaggttgtggttgtagagagacggtgatgactgtcgtggaggtcggtg 200  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48012668 aatcggactgttacactattgatgacgacggtattgtgaggtgaaagctcaggaggttgtggttgtagagagacggtgatgacggtcgtggaggtcggtg 48012767  T
Q  201 agaggtggatatgagaagattgttggacggtggtggtggtggtgccggtgagagaatccaa-cacatatattcgacgaagatatttcaattaaaattcaa 299  Q
    ||||||||||||||||||||| ||||||||||||||||      ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48012768 agaggtggatatgagaagatt-ttggacggtggtggtg------ccggtgagagaatccaaacacatatattcgacgaagatatttcaattaaaattcaa 48012860  T
Q  300 aattgagtacttctctctcaaagctgaaaataatgttagagtcacggccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatcttt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48012861 aattgagtacttctctctcaaagctgaaaataatgttagagtcacggccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatcttt 48012960  T
Q  400 cacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaat 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48012961 cacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaat 48013042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 51312422 - 51312529
Alignment:
Q  120 tgatgacgacggtattgtgagg-tgaaagctcaggaggttgtggttgtagagagacggtgatgactgtcgtggaggtcggtgagaggtggatatgagaag 218  Q
    |||||||||| || || ||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||    
T  51312422 tgatgacgacagtgttatgagggtgaaagctcatgaggttgtggttgtagagagacagtgatgactgtcgtggaggtcggtgagaggtggacctgagaag 51312521  T
Q  219 attgttgg 226  Q
    ||||||||    
T  51312522 attgttgg 51312529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 43426956 - 43426897
Alignment:
Q  55 agcacatataaacacatattaaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||||||||||||||| |||||||| | ||||| ||||||| |||||||    
T  43426956 agcacatataaacacatattaaacaattaaaaataattctagcgaaaatcgggctgttac 43426897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 16821207 - 16821252
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaacttag 56  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||    
T  16821207 aacatcaattgaacatgaatcacatctcaaatcaacaacaacttag 16821252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 14081353 - 14081413
Alignment:
Q  55 agcacatataaacacat-attaaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||||| || ||||||| |||||||||| ||||| ||||||| |||||||    
T  14081353 agcacatataaacacataataaaacaattaaaaataaatctagcgaaaatcgggctgttac 14081413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 39657401 - 39657453
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcgg 106  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||| |||||||    
T  39657401 agcacatataaacacatattaaaacaattaaaaataaatctagcgaaaatcgg 39657453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 13838962 - 13839009
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||||||||||| |||||| | ||||||||||| |||||||||||    
T  13838962 aacatcaattgaacaagaatcataactcaatccaaccacaacttagca 13839009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 15859219 - 15859172
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||||||||||| |||||| | |||||| ||||||||||||||||    
T  15859219 aacatcaattgaacaagaatcataactcaattcaacaacaacttagca 15859172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 15876128 - 15876179
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaactta 55  Q
    |||||| |||||||||||||||||||||  ||| |||| |||||||||||||    
T  15876128 caacaacaacatcaattgaacatgaatcttatcacaattcaacaacaactta 15876179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33369098 - 33369039
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcaca 60  Q
    |||||||||||||||||||| ||||||| || ||||  ||| |||||||||| |||||||    
T  33369098 taacaacaaaaacatcaattaaacatgattctcatcataattcaacaacaacatagcaca 33369039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 51158213 - 51158166
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||||||||||| |||||| | ||||||| |||||||||||||||    
T  51158213 aacatcaattgaacaagaatcataactcaatctaacaacaacttagca 51158166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 16880183 - 16880237
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    |||||| |||||||||||||||||||||  ||| |||| |||||||||| |||||    
T  16880183 caacaataacatcaattgaacatgaatcttatcacaattcaacaacaacatagca 16880237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 12264981 - 12264940
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    ||||||||| ||||||||||||||||||| | ||||||||||    
T  12264981 aacatcaatggaacatgaatcacatctcatttcaacaacaac 12264940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 11060377 - 11060317
Alignment:
Q  55 agcacatataaacacat-attaaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||||| || ||||||| |||||||||| ||| | ||||||| |||||||    
T  11060377 agcacatataaacacataataaaacaattaaaaataaatctagtgaaaatcgggctgttac 11060317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 25103406 - 25103347
Alignment:
Q  55 agcacatataaacacatattaaa-caataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||| |||||||||||||| |||| |||| ||||| ||||| |||||||||||||||    
T  25103406 agcacataaaaacacatattaaaacaattaaaa-taaatctagcgaaaatcggactgttac 25103347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 30208055 - 30208091
Alignment:
Q  55 agcacatataaacacatattaaacaataaaaaataaa 91  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  30208055 agcacatataaacacatataaaacaattaaaaataaa 30208091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 40940003 - 40940063
Alignment:
Q  55 agcacatataaacacat-attaaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||||| || ||||||| |||||||||| ||| | ||||||| |||||||    
T  40940003 agcacatataaacacataataaaacaattaaaaataaatctagtgaaaatcgggctgttac 40940063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 366 - 481
Target Start/End: Original strand, 23127114 - 23127229
Alignment:
Q  366 tggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaa 465  Q
    |||||||||||||||| |||||||| | || ||||| ||  | |||||||||||||||||||||||| ||||||||||||||||||| |||||| || |     
T  23127114 tggaagaattgtaacagaacaaattatgatatttcaactgacattaggattacaaaaatttaccatgcataaaatctagaaacttcatccaaaaatgcag 23127213  T
Q  466 aacaattgtttccaat 481  Q
    || ||||||| |||||    
T  23127214 aataattgttgccaat 23127229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 393 - 473
Target Start/End: Complemental strand, 5334635 - 5334555
Alignment:
Q  393 aatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattg 473  Q
    |||||||||||  |||||  || |||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||    
T  5334635 aatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaacttcagccaaaaatggaaaacaattg 5334555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 410 - 475
Target Start/End: Original strand, 5255865 - 5255930
Alignment:
Q  410 taggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtt 475  Q
    |||||||||| ||| ||| |||| |||||||||||||||||||||||||| |||||||||||||||    
T  5255865 taggattacataaacttagcatggataaaatctagaaacttcagccaaaaatggaaaacaattgtt 5255930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 360 - 475
Target Start/End: Complemental strand, 5351946 - 5351832
Alignment:
Q  360 atgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaa 459  Q
    ||||| ||||| |||||||||| ||||||||  |||||||||||  |||||  || || ||||||| | |||| |||||||| ||||||| |||||||||    
T  5351946 atgacatggaacaattgtaacagaacaaattagaatctttcaccactctttgtgaata-aaaaattcaacatggataaaatcaagaaactacagccaaaa 5351848  T
Q  460 ttggaaaacaattgtt 475  Q
     |||||||||||||||    
T  5351847 atggaaaacaattgtt 5351832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 475
Target Start/End: Original strand, 5180533 - 5180598
Alignment:
Q  410 taggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtt 475  Q
    |||||||||||||| ||| |||| |||||||||| ||||||||||| ||| |||||||||||||||    
T  5180533 taggattacaaaaacttagcatggataaaatctaaaaacttcagccgaaaatggaaaacaattgtt 5180598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 32352828 - 32352888
Alignment:
Q  55 agcacatataaacacatattaaa-caataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| ||||||| |||||||    
T  32352828 agcacatataaacacatattaaaacaattaaaaataaatatagcgaaaatcgggctgttac 32352888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 346 - 432
Target Start/End: Complemental strand, 5098732 - 5098646
Alignment:
Q  346 gccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatg 432  Q
    ||||||| ||| ||||||| |||||||||||||||| ||||| ||  |||  ||||||| | |||||||||||| ||||||||||||    
T  5098732 gccaaaagctatatatgacatggaagaattgtaacagaacaacttacaatagttcacctctatttaggattacacaaatttaccatg 5098646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 434 - 475
Target Start/End: Complemental strand, 5687614 - 5687573
Alignment:
Q  434 ataaaatctagaaacttcagccaaaattggaaaacaattgtt 475  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  5687614 ataaaatctagaaactgcagccaaaattggaaaacaattgtt 5687573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 29665936 - 29665988
Alignment:
Q  6 acaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    |||| |||||||||||||||||||||| |||||| | ||||||||||||||||    
T  29665936 acaacaacatcaattgaacatgaatcatatctcatttcaacaacaacttagca 29665988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 33537757 - 33537697
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||| |||||| ||||||||    
T  33537757 agcacatataaacacatattaaaacaattaaaaataaatctagcgaaaatcgaactgttac 33537697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 358 - 449
Target Start/End: Original strand, 5100521 - 5100612
Alignment:
Q  358 atatgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaact 449  Q
    ||||||| |||||||||||||||| ||||||||  |||||||||    |||||  || |||||||||| |||| | ||||||||||||||||    
T  5100521 atatgacatggaagaattgtaacagaacaaattagaatctttcagaactctttgtgaatacaaaaattcaccaaggataaaatctagaaact 5100612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 5135630 - 5135713
Alignment:
Q  366 tggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaact 449  Q
    |||||||||||||||| ||||||||  |||||||||    |||||  || |||||||||| |||| ||||||||||||||||||    
T  5135630 tggaagaattgtaacagaacaaattagaatctttcagaactctttttgaatacaaaaattcaccaagaataaaatctagaaact 5135713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 460
Target Start/End: Complemental strand, 5398604 - 5398509
Alignment:
Q  360 atgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaa 459  Q
    ||||| |||||||||||||||| ||||||||  |||||||||||  |||    || || ||||||| |||||| ||||||||||||||||| ||||||||    
T  5398604 atgacatggaagaattgtaacagaacaaattagaatctttcaccactct----gaata-aaaaattcaccatggataaaatctagaaacttaagccaaaa 5398510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 18398998 - 18399052
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    |||||| ||||||||||||||||||||| |||| |||| |||||||||| |||||    
T  18398998 caacaacaacatcaattgaacatgaatctcatcacaattcaacaacaacatagca 18399052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 27740907 - 27740953
Alignment:
Q  12 acatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  27740907 acatcaattgaacatgaatcatatctcaattcaacaacgacttagca 27740953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 31466976 - 31466926
Alignment:
Q  64 aaacacatattaaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||| |||||||||| || || |||||||||||||||    
T  31466976 aaacacatattaaacaattaaaaataaatctaacgaaaatcggactgttac 31466926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 17082569 - 17082517
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcgg 106  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||| |||||||    
T  17082569 agcacatataaacacatattaaaacaattaaaaataaatctagcgaaaatcgg 17082517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 18506777 - 18506725
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcgg 106  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||| |||||||    
T  18506777 agcacatataaacacatattaaaacaattaaaaataaatctagcgaaaatcgg 18506725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 25651297 - 25651353
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcaca 60  Q
    |||||| ||||||||||||||||||||| ||||  ||| |||||||||| |||||||    
T  25651297 caacaacaacatcaattgaacatgaatctcatcataattcaacaacaacatagcaca 25651353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 25654991 - 25655051
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||  ||||||| |||||||    
T  25654991 agcacatataaacacatattaaaacaattaaaaataaatctagcaaaaatcgggctgttac 25655051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 481
Target Start/End: Original strand, 5242214 - 5242276
Alignment:
Q  419 aaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaat 481  Q
    ||||||| |||||| |||||||||||||||| |||  |||  ||||||||||||||| |||||    
T  5242214 aaaaattcaccatggataaaatctagaaactacagaaaaagatggaaaacaattgttgccaat 5242276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 22361952 - 22361898
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    |||||| ||||||||||||||||||||  |||| |||| |||||||||| |||||    
T  22361952 caacaacaacatcaattgaacatgaatttcatcacaattcaacaacaacatagca 22361898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 460
Target Start/End: Complemental strand, 5439587 - 5439519
Alignment:
Q  392 taatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaat 460  Q
    |||||||| | || |||||||||||||||||| |||| ||| |||||||  | |||||||| |||||||    
T  5439587 taatcttttatctctctttaggattacaaaaaattacaatggataaaataaaaaaacttcaaccaaaat 5439519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 15004334 - 15004290
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcg 98  Q
    |||||||||||||||||||| ||||||| |||||||||| |||||    
T  15004334 agcacatataaacacatattaaaacaattaaaaataaatctagcg 15004290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 21932039 - 21932091
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcgg 106  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||  |||||||    
T  21932039 agcacatataaacacatattaaaacaattaaaaataaatctagcaaaaatcgg 21932091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 22848868 - 22848928
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||||| ||||||| |||||||||| || || |||| || |||||||    
T  22848868 agcacatataaacacatattaaaacaattaaaaataaatctaacgaaaatggggctgttac 22848928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 23153518 - 23153562
Alignment:
Q  14 atcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    |||||||||||| |||||| | ||||||| |||||||||||||||    
T  23153518 atcaattgaacaagaatcataactcaatctaacaacaacttagca 23153562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 25367424 - 25367376
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    |||||| |||||||||||||||||||||  ||| |||| ||||||||||    
T  25367424 caacaacaacatcaattgaacatgaatcttatcacaattcaacaacaac 25367376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 15675294 - 15675237
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||    
T  15675294 taacaacaataacatcaattgaacatgaatcatatctcaattcaacaacaacttagca 15675237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 31115687 - 31115742
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttag 56  Q
    ||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||    
T  31115687 taacaacaataacatcaattgaacatgaatcatatctcaattcaacaacaacttag 31115742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 10104452 - 10104398
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    |||||| |||||||||||||||||||||| |||||||| ||||||||||||||||    
T  10104452 caacaacaacatcaattgaacatgaatcatatctcaattcaacaacaacttagca 10104398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 40885756 - 40885702
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    |||||| |||||||||||||||||||||| |||||||| |||||| |||||||||    
T  40885756 caacaacaacatcaattgaacatgaatcatatctcaattcaacaataacttagca 40885702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 10644287 - 10644332
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaacttag 56  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||    
T  10644287 aacatcaattgaacatgaatcacatctcaaatcaacaacaacttag 10644332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 7185256 - 7185196
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||| ||||| | |||||||    
T  7185256 agcacatataaacacatattaaaacaattaaaaataaatctagcgaaaatcaggctgttac 7185196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 13589514 - 13589454
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||||| ||||||| |||||||| | ||||| ||||||| |||||||    
T  13589514 agcacatataaacacatattaaaacaattaaaaataattctagcgaaaatcgggctgttac 13589454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 15213005 - 15212953
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcgg 106  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||| |||||||    
T  15213005 agcacatataaacacatattaaaacaattaaaaataaatctagcgaaaatcgg 15212953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 18276494 - 18276550
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcaca 60  Q
    |||||| ||||||||||||||||||||| |||| |||| |||||||||  |||||||    
T  18276494 caacaacaacatcaattgaacatgaatctcatcacaattcaacaacaatatagcaca 18276550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 30231893 - 30231833
Alignment:
Q  55 agcacatataaacacatattaaa-caataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||| |||| |||| |||||||||| ||| | |||||||||||||||    
T  30231893 agcacatataaacacataataaaacaattaaaaataaatctagtgaaaatcggactgttac 30231833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 41916189 - 41916129
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||||| ||||||| |||||||| | ||||  |||||||||||||||    
T  41916189 agcacatataaacacatattaaaacaattaaaaataattctagcaaaaatcggactgttac 41916129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 49072519 - 49072579
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||| ||||||||||||||| ||||||| |||||||||| ||||| ||||||| |||||||    
T  49072519 agcagatataaacacatattaaaacaattaaaaataaatctagcgaaaatcgggctgttac 49072579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 13246498 - 13246545
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||||||||||| |||||| | ||||||| |||||||||||||||    
T  13246498 aacatcaattgaacaagaatcataactcaatctaacaacaacttagca 13246545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 15044888 - 15044942
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    |||||| |||||||||||||||||||||  ||| |||| |||||||||| |||||    
T  15044888 caacaacaacatcaattgaacatgaatcttatcacaattcaacaacaacatagca 15044942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 15109536 - 15109482
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    |||||| |||||||||||||||||||||  ||| |||| |||||||||| |||||    
T  15109536 caacaacaacatcaattgaacatgaatcttatcacaattcaacaacaacatagca 15109482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 8374576 - 8374617
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    ||||||||| ||||||||||||||||||| | ||||||||||    
T  8374576 aacatcaatggaacatgaatcacatctcatttcaacaacaac 8374617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 17145845 - 17145804
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    ||||||||| ||||||||||||||||||| | ||||||||||    
T  17145845 aacatcaatggaacatgaatcacatctcatttcaacaacaac 17145804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 18248286 - 18248327
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    ||||||||| ||||||||||||||||||| | ||||||||||    
T  18248286 aacatcaatggaacatgaatcacatctcatttcaacaacaac 18248327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 54118449 - 54118392
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||| | ||||||||||||||| |||||| | || |||| |||||||||||||||    
T  54118449 taacaactataacatcaattgaacaagaatcataactaaatctaacaacaacttagca 54118392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 27961830 - 27961890
Alignment:
Q  55 agcacatataaacacat-attaaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||||| || ||||||| |||||||||| ||||  ||||||| |||||||    
T  27961830 agcacatataaacacataataaaacaattaaaaataaatctagcaaaaatcgggctgttac 27961890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 52265695 - 52265647
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    |||||| |||||||||||||||||||||  ||| |||| ||||||||||    
T  52265695 caacaacaacatcaattgaacatgaatcttatcacaattcaacaacaac 52265647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 24341594 - 24341537
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||    
T  24341594 taacaacaataacatcaattgaacatgaatcatatctcaattcaacaacaacttagca 24341537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 36982646 - 36982593
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaactt 54  Q
    ||||||||| ||||||||||||||| |||||| | |||||| ||||||||||||    
T  36982646 taacaacaataacatcaattgaacaggaatcataactcaattcaacaacaactt 36982593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 462806 - 462853
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||||||||||| |||||| | ||||||| |||||||||||||||    
T  462806 aacatcaattgaacaagaatcataactcaatctaacaacaacttagca 462853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 8891310 - 8891357
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||||||||||| |||||| | ||||||| |||||||||||||||    
T  8891310 aacatcaattgaacaagaatcataactcaatctaacaacaacttagca 8891357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 19794899 - 19794852
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||||||||||| |||||| | |||||| ||||||||||||||||    
T  19794899 aacatcaattgaacaagaatcataactcaattcaacaacaacttagca 19794852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 9638237 - 9638294
Alignment:
Q  58 acatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||||| ||||||| |||||||| | ||||| ||||||| |||||||    
T  9638237 acatataaacacatattaaaacaattaaaaataattttagcgaaaatcgggctgttac 9638294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 23821792 - 23821736
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcaca 60  Q
    |||||| ||||||||||||||||||||| ||||  ||| |||||| ||| |||||||    
T  23821792 caacaacaacatcaattgaacatgaatctcatcataattcaacaataacatagcaca 23821736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 23830871 - 23830815
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcaca 60  Q
    |||||| ||||||||||||||||||||| ||||  ||| |||||| ||| |||||||    
T  23830871 caacaacaacatcaattgaacatgaatctcatcataattcaacaataacatagcaca 23830815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 18531272 - 18531215
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||| ||| |||||||||||||||||||||| |||||||| ||||||||||||||||    
T  18531272 taacagcaataacatcaattgaacatgaatcatatctcaattcaacaacaacttagca 18531215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 22054038 - 22053981
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||| ||| |||||||||||||||||||||| |||||||| ||||||||||||||||    
T  22054038 taacagcaataacatcaattgaacatgaatcatatctcaattcaacaacaacttagca 22053981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 3674743 - 3674803
Alignment:
Q  55 agcacatataaacacatattaaa-caataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||| |||| |||| |||||||||| ||||| |||||||||||||||    
T  3674743 agcacatataaacacataataaaacaattaaaaataaatctagcgaaaatcggactgttac 3674803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 37984224 - 37984284
Alignment:
Q  55 agcacatataaacacata-ttaaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||| ||||||||| |||||||||| ||||| ||||||| |||||||    
T  37984224 agcacatataaacacatatttaaacaattaaaaataaatctagcgaaaatcgggctgttac 37984284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 31726664 - 31726796
Alignment:
Q  114 cgctgttgatgacgacggta-ttgtgaggtgaaagctcaggaggttgtggttgtagag--agacggtgatgactgtcgtggaggtcggtgagaggtggat 210  Q
    |||| ||||||||||||||  ||||||| ||| || ||||| ||| |||| |||||||  ||||||||||||| || ||||||||| || |||| |||||    
T  31726664 cgctattgatgacgacggtggttgtgag-tgagagttcaggcggtggtggctgtagagagagacggtgatgacagtggtggaggtcagtcagagatggat 31726762  T
Q  211 atgagaagattgttggacggtggtggtggtggtg 244  Q
     | |||||| ||||||| | ||||| ||||||||    
T  31726763 ctaagaagaatgttggaggatggtgatggtggtg 31726796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 4200169 - 4200128
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  4200169 aacatcaattgaacatgaatcacatctcaaatcaacaacaac 4200128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 11966135 - 11966195
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||||| ||||||| |||||||| | ||| | |||||||||||||||    
T  11966135 agcacatataaacacatattaaaacaattaaaaataattctagtgaaaatcggactgttac 11966195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 21617076 - 21617124
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    |||||| ||||||||||||||||||||| |||| |||| ||||||||||    
T  21617076 caacaacaacatcaattgaacatgaatctcatcacaattcaacaacaac 21617124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 27182742 - 27182695
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||||||||||| |||||| | ||||||| |||||||||||||||    
T  27182742 aacatcaattgaacaagaatcataactcaatctaacaacaacttagca 27182695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 7728480 - 7728534
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    |||||| |||||||||||||||||||||  ||| |||| |||||||||| |||||    
T  7728480 caacaacaacatcaattgaacatgaatcttatcacaattcaacaacaacatagca 7728534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 23493979 - 23494033
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    |||||| |||||||||||||||||||||  ||| |||| |||||||||| |||||    
T  23493979 caacaacaacatcaattgaacatgaatcttatcacaattcaacaacaacatagca 23494033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 11212253 - 11212212
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    ||||||||| ||||||||||||||||||| | ||||||||||    
T  11212253 aacatcaatggaacatgaatcacatctcatttcaacaacaac 11212212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 21110579 - 21110636
Alignment:
Q  58 acatataaacacat-attaaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||| || ||||||| |||||||||| ||||| ||||||| |||||||    
T  21110579 acatataaacacataataaaacaattaaaaataaatctagcgaaaatcgggctgttac 21110636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 23507023 - 23507080
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||| | ||||||||||||||| |||||| |||||||   |||||||||||||||    
T  23507023 taacaaccataacatcaattgaacaagaatcaaatctcaaattaacaacaacttagca 23507080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 35791287 - 35791246
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    ||||||||| ||||||||||||||||||| | ||||||||||    
T  35791287 aacatcaatggaacatgaatcacatctcatttcaacaacaac 35791246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 432523 - 432571
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    |||||| |||||||||||||||||||||  | | |||||||||||||||    
T  432523 caacaacaacatcaattgaacatgaatcttaccacaatccaacaacaac 432571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 21222795 - 21222739
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcaca 60  Q
    |||||| ||||| |||||||||||||||  ||| |||| |||||||||| |||||||    
T  21222795 caacaacaacattaattgaacatgaatcttatcacaattcaacaacaacatagcaca 21222739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 23418100 - 23418160
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||||| ||||||| |||||||| | ||||  ||||||| |||||||    
T  23418100 agcacatataaacacatattaaaacaattaaaaataattttagcaaaaatcgggctgttac 23418160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 23467312 - 23467372
Alignment:
Q  55 agcacatataaacacat-attaaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||||| || ||||||| |||||||||| || || ||||||| |||||||    
T  23467312 agcacatataaacacataataaaacaattaaaaataaatctaacgaaaatcgggctgttac 23467372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 26559244 - 26559182
Alignment:
Q  55 agcacatataaacacata---ttaaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||||||   | ||||||| |||||||||| ||||| ||||| |||||||||    
T  26559244 agcacatataaacacatatattaaaacaattaaaaataaatctagcgaaaatcagactgttac 26559182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 32790 - 32730
Alignment:
Q  55 agcacatataaacacatattaaa-caataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||| |||||||||||||||    
T  32790 agcacatataaacacatattaaaacaattaaaaataaatctagcgaaaatcggactgttac 32730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 67405 - 67345
Alignment:
Q  55 agcacatataaacacatattaaa-caataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||| |||||||||||||||    
T  67405 agcacatataaacacatattaaaacaattaaaaataaatctagcgaaaatcggactgttac 67345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 22612 - 22553
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcaca 60  Q
    ||||||||| |||||||||| ||||||| |||||||||||| |||||||||| |||||||    
T  22612 taacaacaacaacatcaattaaacatgattcacatctcaattcaacaacaacatagcaca 22553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 13321072 - 13321130
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaa-caacttagca 58  Q
    ||||||||| |||||||||||||||||||||| |||||||| |||||| ||||||||||    
T  13321072 taacaacaataacatcaattgaacatgaatcatatctcaattcaacaatcaacttagca 13321130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 33560474 - 33560534
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||| ||||||| |||||||    
T  33560474 agcacatataaacacatattaaaacaattaaaaataaatctagcgaaaatcgggctgttac 33560534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 13911209 - 13911166
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaactt 54  Q
    ||||||||||||||||||||||||||||||  ||||||||||||    
T  13911209 aacatcaattgaacatgaatcacatctcaaatcaacaacaactt 13911166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 9611367 - 9611423
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcaca 60  Q
    |||||| ||||||||||||||||||||| ||||  ||| |||||||||| |||||||    
T  9611367 caacaacaacatcaattgaacatgaatctcatcataattcaacaacaacatagcaca 9611423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 9723247 - 9723187
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||||| ||||||| |||||||| | ||||| ||||||| |||||||    
T  9723247 agcacatataaacacatattaaaacaattaaaaataattctagcgaaaatcgggctgttac 9723187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 9838939 - 9838995
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcaca 60  Q
    |||||| ||||||||||||||||||||| ||||  ||| |||||||||| |||||||    
T  9838939 caacaacaacatcaattgaacatgaatctcatcataattcaacaacaacatagcaca 9838995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 16915115 - 16915059
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcaca 60  Q
    |||||| ||||||||||||||||||||| ||||  ||| |||||||||| |||||||    
T  16915115 caacaacaacatcaattgaacatgaatctcatcataattcaacaacaacatagcaca 16915059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 45146191 - 45146251
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||| |||||| ||| ||||    
T  45146191 agcacatataaacacatattaaaacaattaaaaataaatctagcgaaaatcgaactattac 45146251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 45150392 - 45150448
Alignment:
Q  57 cacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgtt 112  Q
    |||||||||||||||||| ||||||| |||||||||| ||||| |||||||| ||||    
T  45150392 cacatataaacacatattaaaacaattaaaaataaatctagcgaaaatcggaatgtt 45150448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 11580934 - 11580887
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||||||||||| |||||| | ||||||| |||||||||||||||    
T  11580934 aacatcaattgaacaagaatcataactcaatctaacaacaacttagca 11580887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 47481226 - 47481179
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||||||||||| |||||| | |||||| ||||||||||||||||    
T  47481226 aacatcaattgaacaagaatcataactcaattcaacaacaacttagca 47481179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 13377589 - 13377643
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    |||||| |||||||||||||||||||||  ||| |||| |||||||||| |||||    
T  13377589 caacaacaacatcaattgaacatgaatcttatcacaattcaacaacaacatagca 13377643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 14268294 - 14268233
Alignment:
Q  55 agcacatataaacacatatt-aaacaa-taaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||||| |||||| |||||||||||| || || ||||||| |||||||    
T  14268294 agcacatataaacacatattaaaacaattaaaaaataaatctaacgaaaatcgggctgttac 14268233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 3060034 - 3060078
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaactta 55  Q
    ||||||||||||||| |||||| | ||||||| ||||||||||||    
T  3060034 aacatcaattgaacaagaatcataactcaatctaacaacaactta 3060078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 13275633 - 13275693
Alignment:
Q  55 agcacatataaacacat-attaaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||||| | |||||||| |||||||||| ||||| ||||||  |||||||    
T  13275633 agcacatataaacacataaataaacaattaaaaataaatctagcgaaaatcgagctgttac 13275693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 20583001 - 20582941
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||| ||||||||||| ||||||| |||||||||| ||||| | ||||| |||||||    
T  20583001 agcacataaaaacacatattaaaacaattaaaaataaatctagcgaatatcgggctgttac 20582941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 48356704 - 48356752
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    |||||| ||||||||||||||||||||| ||||  ||| ||||||||||    
T  48356704 caacaacaacatcaattgaacatgaatctcatcataattcaacaacaac 48356752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 25094689 - 25094747
Alignment:
Q  55 agcacatataaacacatattaaacaataaaaaataaatatagcggaaatcggactgtta 113  Q
    |||||| |||||||||||||||||||| |||||||| ||||||| ||||||| ||||||    
T  25094689 agcacaaataaacacatattaaacaattaaaaataattatagcgaaaatcgggctgtta 25094747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 19603971 - 19604029
Alignment:
Q  57 cacatataaacacatattaaa-caataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||| |||| |||| |||||||||| ||||| |||||||||||||||    
T  19603971 cacatataaacacataataaaacaattaaaaataaatctagcgaaaatcggactgttac 19604029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 37844656 - 37844599
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||| | ||||||||||||||| |||||| | ||||||| |||||||||||||||    
T  37844656 taacaaccataacatcaattgaacaagaatcataactcaatctaacaacaacttagca 37844599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 16646792 - 16646852
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||||| ||| ||| |||||||||| ||| | |||||||||||||||    
T  16646792 agcacatataaacacatattaaaataattaaaaataaatctagggaaaatcggactgttac 16646852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 17608985 - 17609044
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcaca 60  Q
    ||||||||| |||| |||||||||||||||| ||||  ||| |||||||||| |||||||    
T  17608985 taacaacaacaacaacaattgaacatgaatctcatcataattcaacaacaacatagcaca 17609044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 18851831 - 18851777
Alignment:
Q  60 atataaacacatattaaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||| |||||| |||||||| | ||||| ||||| |||||||||    
T  18851831 atataaacacatattgaacaattaaaaataattctagcgaaaatcagactgttac 18851777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 22828810 - 22828752
Alignment:
Q  57 cacatataaacacat-attaaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||| || ||||||| |||||||||| ||||| ||||||| |||||||    
T  22828810 cacatataaacacataataaaacaattaaaaataaatctagcgaaaatcgggctgttac 22828752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 37234047 - 37233993
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    |||||| ||||||||||||||||||||| |||| |||| |||| ||||| |||||    
T  37234047 caacaacaacatcaattgaacatgaatctcatcacaattcaaccacaacatagca 37233993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 38033068 - 38033010
Alignment:
Q  57 cacatataaacacatattaaa-caataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||| || |||| |||| |||||||||| ||||| |||||||||||||||    
T  38033068 cacatataaacacgtactaaaacaattaaaaataaatttagcgaaaatcggactgttac 38033010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 944935 - 945004
Alignment:
Q  175 ggtgatgactgtcgtggaggtcggtgagaggtggatatgagaagattgttggacggtggtggtggtggtg 244  Q
    ||||||||| || |||| ||| |||||||| |||||||| |||||  |||||  ||||||||||||||||    
T  944935 ggtgatgacagtggtggcggtgggtgagagatggatatgggaagaacgttggtgggtggtggtggtggtg 945004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 69517 - 69573
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcaca 60  Q
    |||||| ||||||||||||||||||||| |||| |||| |||||||||| |||||||    
T  69517 caacaacaacatcaattgaacatgaatctcatcacaattcaacaacaacatagcaca 69573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 5854674 - 5854730
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcaca 60  Q
    |||||| ||||||||||||||||||||| |||| |||| |||||||||| |||||||    
T  5854674 caacaacaacatcaattgaacatgaatctcatcacaattcaacaacaacatagcaca 5854730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 33529287 - 33529345
Alignment:
Q  57 cacatataaacacatattaaa-caataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||||||||| |||| | |||||||||||||| ||||||| |||||||    
T  33529287 cacatataaacacatattaaaacaattataaataaatatagcgaaaatcgggctgttac 33529345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 38533709 - 38533763
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    |||||| ||||||||||||||||||||| |||| |||| |||||||||| |||||    
T  38533709 caacaacaacatcaattgaacatgaatctcatcacaattcaacaacaacatagca 38533763  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 30120790 - 30120835
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaacttag 56  Q
    ||||||||||||||||||||||||||||||   |||||||||||||    
T  30120790 aacatcaattgaacatgaatcacatctcaaattaacaacaacttag 30120835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 17502988 - 17503036
Alignment:
Q  55 agcacatataaacacatattaaacaataaaaaataaatatagcggaaat 103  Q
    |||||||| |||||||||||||||||| |||||||||| ||||| ||||    
T  17502988 agcacataaaaacacatattaaacaattaaaaataaatctagcgaaaat 17503036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 27232485 - 27232426
Alignment:
Q  55 agcacatataaacacatattaaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||| |||||||||||||||||| |||||||||| ||| | |||| || |||||||    
T  27232485 agcacataaaaacacatattaaacaattaaaaataaatctagtgaaaattgggctgttac 27232426  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 16195298 - 16195339
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    ||||||||| ||||||||||||||||||| | ||||||||||    
T  16195298 aacatcaatggaacatgaatcacatctcatttcaacaacaac 16195339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 22736018 - 22735977
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    |||||||||||||||||||||  ||| |||||||||||||||    
T  22736018 aacatcaattgaacatgaatcttatcacaatccaacaacaac 22735977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 23223387 - 23223338
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaat 103  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||| ||||    
T  23223387 agcacatataaacacatattaaaacaattaaaaataaatctagcgaaaat 23223338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 45464547 - 45464490
Alignment:
Q  58 acatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||||| ||||||| |||||||||| ||||| |||| || |||||||    
T  45464547 acatataaacacatattaaaacaattaaaaataaatctagcgaaaattgggctgttac 45464490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 15933358 - 15933406
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    |||||| ||||||||||||||||||||| ||||  ||| ||||||||||    
T  15933358 caacaacaacatcaattgaacatgaatctcatcataattcaacaacaac 15933406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 18040978 - 18040918
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||| ||||||| ||||||| |||||||| | ||||| ||||||| |||||||    
T  18040978 agcacatataaatacatattaaaacaattaaaaataattctagcgaaaatcgggctgttac 18040918  T

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Target: scaffold0025 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 8917 - 8964
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    |||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  8917 aacatcaattgaacattaatcatatctcaattcaacaacaacttagca 8964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 148779 - 148836
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||| | ||||||||||||||| |||||| |||||||   |||||||||||||||    
T  148779 taacaaccataacatcaattgaacaagaatcaaatctcaaattaacaacaacttagca 148836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 31860 - 31817
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaactt 54  Q
    ||||||||||||||||||||||||||||||  ||||||||||||    
T  31860 aacatcaattgaacatgaatcacatctcaaatcaacaacaactt 31817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0529 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0529
Description:

Target: scaffold0529; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3020 - 3078
Alignment:
Q  1 taacaacaaaaacatcaattgaa-catgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||||| |||||||||| || ||||||||| |||||||| ||||||||||||||||    
T  3020 taacaacaataacatcaattaaaacatgaatcatatctcaattcaacaacaacttagca 3078  T

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Target: scaffold0075 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 34666 - 34608
Alignment:
Q  1 taacaacaaaaacatcaattgaa-catgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||||| |||||||||| || ||||||||| |||||||| ||||||||||||||||    
T  34666 taacaacaataacatcaattaaaacatgaatcatatctcaattcaacaacaacttagca 34608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19264 - 19321
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||| ||| ||||||||||||||| |||||| | |||||| ||||||||||||||||    
T  19264 taacagcaataacatcaattgaacaggaatcataactcaattcaacaacaacttagca 19321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 21348 - 21405
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||| ||| ||||||||||||||| |||||| | |||||| ||||||||||||||||    
T  21348 taacagcaataacatcaattgaacaggaatcataactcaattcaacaacaacttagca 21405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 31080 - 31136
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagcaca 60  Q
    |||||| ||||||||||||||||||||| |||| |||| |||||| ||| |||||||    
T  31080 caacaacaacatcaattgaacatgaatctcatcacaattcaacaagaacatagcaca 31136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 197440 - 197392
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    |||||| ||||||||||||||||||||| |||| |||| ||||||||||    
T  197440 caacaacaacatcaattgaacatgaatctcatcacaattcaacaacaac 197392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1932 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1932
Description:

Target: scaffold1932; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 793 - 734
Alignment:
Q  55 agcacatataaacacatattaaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||||||| ||||||| |||||||| | || || ||||||| |||||||    
T  793 agcacatataaacacatataaaacaattaaaaataattttaacgaaaatcgggctgttac 734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 1683 - 1640
Alignment:
Q  55 agcacatataaacacatattaaacaataaaaaataaatatagcg 98  Q
    |||||||||||||||||| |||||||| |||||||||| |||||    
T  1683 agcacatataaacacataataaacaattaaaaataaatctagcg 1640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 247637 - 247590
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||||||||||| |||||| | ||||||| |||||||||||||||    
T  247637 aacatcaattgaacaagaatcataactcaatctaacaacaacttagca 247590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0700 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 2585 - 2639
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    |||||| ||||||||||||||||||||| ||||  ||| |||||||||| |||||    
T  2585 caacaacaacatcaattgaacatgaatctcatcataattcaacaacaacatagca 2639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 77034 - 76980
Alignment:
Q  4 caacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    |||||| ||||||||||||||||||||| || | |||| |||||||||| |||||    
T  77034 caacaacaacatcaattgaacatgaatctcaccacaattcaacaacaacatagca 76980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0266 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0266
Description:

Target: scaffold0266; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 1182 - 1239
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||| | ||||||||||||||| |||||| |||||||   |||||||||||||||    
T  1182 taacaaccataacatcaattgaacaagaatcaaatctcaaattaacaacaacttagca 1239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 41799 - 41844
Alignment:
Q  13 catcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||||||||| |||||| | ||||||| |||||||||||||||    
T  41799 catcaattgaacaagaatcataactcaatctaacaacaacttagca 41844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 45098 - 45139
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    ||||||||| ||||||||||||||||||| | ||||||||||    
T  45098 aacatcaatggaacatgaatcacatctcatttcaacaacaac 45139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 54484 - 54525
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaac 52  Q
    ||||||||| ||||||||||||||||||| | ||||||||||    
T  54484 aacatcaatggaacatgaatcacatctcatttcaacaacaac 54525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 36161 - 36206
Alignment:
Q  11 aacatcaattgaacatgaatcacatctcaatccaacaacaacttag 56  Q
    |||||| |||||||||||||||||||||||   |||||||||||||    
T  36161 aacatctattgaacatgaatcacatctcaaattaacaacaacttag 36206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 123369 - 123312
Alignment:
Q  1 taacaacaaaaacatcaattgaacatgaatcacatctcaatccaacaacaacttagca 58  Q
    ||||||| | ||||||||||||||| |||||| | || |||| |||||||||||||||    
T  123369 taacaaccataacatcaattgaacaagaatcataacttaatctaacaacaacttagca 123312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 14841 - 14901
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    |||||||||||||||||||| ||||||| ||||| || | ||||| ||||| |||||||||    
T  14841 agcacatataaacacatattaaaacaattaaaaaaaattctagcgaaaatcagactgttac 14901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0342 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0342
Description:

Target: scaffold0342; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 13146 - 13206
Alignment:
Q  55 agcacatataaacacatatt-aaacaataaaaaataaatatagcggaaatcggactgttac 114  Q
    ||||||||||||||| |||| ||||||| | |||||||| ||||| ||||||| |||||||    
T  13146 agcacatataaacacgtattaaaacaattagaaataaatctagcgaaaatcgggctgttac 13206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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