View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7458_low_4 (Length: 454)
Name: NF7458_low_4
Description: NF7458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7458_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 21 - 441
Target Start/End: Original strand, 37859511 - 37859929
Alignment:
| Q |
21 |
ctcattgccataatggagtttcgaaacattcgcaagctgcatcgggtggatagttgcaaagtgtcaatgtaatagataatattccttaaacttgcctcca |
120 |
Q |
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| T |
37859511 |
ctcattgccataatggagtttcgaaacattcgcaagctgcattgggtggataattgcaaagtgtcaatgtaatagataatattccttaaacttgcctcca |
37859610 |
T |
|
| Q |
121 |
aacacattcagatcccttgaatcaaagccatgatctcggcatggaggctaatggaatagccaatattaccgtggaagccacattggtaatcaccgttgga |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37859611 |
aacacattcagatcccttgaatcaaagccatgatctcggcatggaggctaatggaatagccaatattaccgtggaagccacatttgtaatcaccgttgga |
37859710 |
T |
|
| Q |
221 |
attcctaatcaaaccaccaaatgctgccatacctggattggtttgggagcgagagcgaccatcgaaattgaaaacataagcattagttgcatcttccttc |
320 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859711 |
attcctaatcaaaccacc--acgctgccatacctggattggtttgggagcgagagcgaccatcgaaattgaaaacataagcattagttgcatcttccttc |
37859808 |
T |
|
| Q |
321 |
caagcaattagcctagttttcttgtttaatatctcgagtgataagcgtaaattttttacactaaagccatgagagggaagcaattttcgttgctttattt |
420 |
Q |
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||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859809 |
caagcaattagccgagttttcttttttaatatcttgagtgataagcgtaaattttttacactaaagccatgagagggaagcaattttcgttgctttattt |
37859908 |
T |
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| Q |
421 |
cttctttcattttttcatttc |
441 |
Q |
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| T |
37859909 |
cttctttcattttttcatttc |
37859929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 21 - 441
Target Start/End: Original strand, 18101903 - 18102320
Alignment:
| Q |
21 |
ctcattgccataatggagtttcgaaacattcgcaagctgcatcgggtggatagttgcaaagtgtcaatgtaatagataatattccttaaacttgcctcca |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18101903 |
ctcattgccataatggagtttcgaaacattcgcaagctgcattgggtggataattgcaaagtgtcaatgtaatagataatattccttaaacttgcctcca |
18102002 |
T |
|
| Q |
121 |
aacacattcagatcccttgaatcaaagccatgatctcggcatggaggctaatggaatagccaatattaccgtggaagccacattggtaatcaccgttgga |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18102003 |
aacacattcagatcccttgaatcaaagccatgatctcggcatggaggctaatggaatagccaatattaccgtggaagccacatttgtaatcaccgttgga |
18102102 |
T |
|
| Q |
221 |
attcctaatcaaaccaccaaatgctgccatacctggattggtttgggagcgagagcgaccatcgaaattgaaaacataagcattagttgcatcttccttc |
320 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18102103 |
attcctaatcaaaccacc--acgctgccatacctggattggtttgggagcgagagcgaccatcgaaattgaaaacataagcattagttgcatcttccttc |
18102200 |
T |
|
| Q |
321 |
caagcaattagcctagttttcttgtttaatatctcgagtgataagcgtaaattttttacactaaagccatgagagggaagcaattttcgttgctttattt |
420 |
Q |
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||||||||||||| || |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18102201 |
caagcaattagccgag-tttcttttttaatatcttgagtgataagcgtaaattttttacactaaagccatgagagggaagcaattttcgttgctttattt |
18102299 |
T |
|
| Q |
421 |
cttctttcattttttcatttc |
441 |
Q |
| |
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||||||||||||||||||||| |
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| T |
18102300 |
cttctttcattttttcatttc |
18102320 |
T |
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