View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7458_low_6 (Length: 417)
Name: NF7458_low_6
Description: NF7458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7458_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 6e-84; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 120 - 277
Target Start/End: Original strand, 41124234 - 41124391
Alignment:
| Q |
120 |
cacttttagggcttgtttgttatagattgtctaaaacgatttttgttatatggttcaaaaatcatagacactataaattatacttttctctattttatta |
219 |
Q |
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| T |
41124234 |
cacttttagggcttgtttgttatagattgtctaaaacgatttttgttatatggttcaaaaatcatagacactataaattatacttttctctattttatta |
41124333 |
T |
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| Q |
220 |
aagatgaaagctaatcaaaatagttatttcattttcaagcataaaaattatttttcaa |
277 |
Q |
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| T |
41124334 |
aagatgaaagctaatcaaaatagttatttcattttcaagcataaaaattatttttcaa |
41124391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 41124160 - 41124241
Alignment:
| Q |
19 |
atatcttcacctaaaacaataagtcatttgatatatactcttttcatcttatttatgcatgttcctctacttgacattttta |
100 |
Q |
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| T |
41124160 |
atatcttcacctaaaacaataagtcatttgatatatactcttttcatcttatttatgcatgttcctctacttgacactttta |
41124241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 353 - 408
Target Start/End: Original strand, 41124470 - 41124525
Alignment:
| Q |
353 |
catactctccaatgaggttgatttttatactattttgtaacagttactagtattat |
408 |
Q |
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| T |
41124470 |
cataccctccaatgaggttgatttttatactattttgtaacagttactaatattat |
41124525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 41124406 - 41124435
Alignment:
| Q |
289 |
ataataacctacacacagtaactagaacat |
318 |
Q |
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| T |
41124406 |
ataataacctacacacagtaactagaacat |
41124435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 273
Target Start/End: Complemental strand, 288995 - 288949
Alignment:
| Q |
226 |
aaagctaatcaaaatagttatttcattttcaagcataaaaattatttt |
273 |
Q |
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| T |
288995 |
aaagctaatgaaaatagctatttcattttcaa-cataaaaattatttt |
288949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 18426285 - 18426331
Alignment:
| Q |
226 |
aaagctaatcaaaatagttatttcattttcaagcataaaaattatttt |
273 |
Q |
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| T |
18426285 |
aaagttaatcaaactagttatttcattttcaa-cataaaaattatttt |
18426331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 13284582 - 13284622
Alignment:
| Q |
233 |
atcaaaatagttatttcattttcaagcataaaaattattttt |
274 |
Q |
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| T |
13284582 |
atcaaaatagttatttcactttcaa-cataaaaattattttt |
13284622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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