View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7458_low_7 (Length: 363)
Name: NF7458_low_7
Description: NF7458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7458_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 47543408 - 47543074
Alignment:
| Q |
11 |
ttattctattaccggcaaatgttaatatattagttatgttagtattttctcttacacgatgtttgaactcggattctctaagctctatgatatattaact |
110 |
Q |
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| T |
47543408 |
ttattctattaccggcaaatgttaatatattagttatgttagtattttctcttacacgatgtttgaactcagattctctaagctctatgatatattaact |
47543309 |
T |
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| Q |
111 |
tggtatgaatggtatatacttaggtgatagcaaccatgatggcccttacttattagaaggggtgatgtccttgaagggtttggatggatgttgctaatga |
210 |
Q |
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| T |
47543308 |
tggtatgaatggtatatacttaggtgatagcaaccatgatggcccttacttattagaaggggtgatgtccttgaagggtttggatggatgttgctaatga |
47543209 |
T |
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| Q |
211 |
tcaaggtggtgcctcttgagcctgcaacacatcaatcacttgcttccgaagaacgaaaacctaccgagaaaaagctggttaaaccaaagtggttaaaaat |
310 |
Q |
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| T |
47543208 |
tcaaggtggtgcctcttgagcctgcaacacatcaatcacttgcttccgaagaacgaaaacctaccgagaaaaagctggttaaaccaaagtggttaaaaat |
47543109 |
T |
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| Q |
311 |
gtgatatcactttgtctcaattgcagtttagaggt |
345 |
Q |
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| T |
47543108 |
gcgatatcactttgtctcaattgcagtttagaggt |
47543074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 42699067 - 42698814
Alignment:
| Q |
11 |
ttattctattaccggcaaatgttaatatattagttatgttagtattttctcttacacgatgtttgaactcggattctctaagctctatgatatattaact |
110 |
Q |
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||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |||||||| | || |||||||| |
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| T |
42699067 |
ttattatattatcggcaaatgttaatatattagttatgt--gtattttctcttacacgatgtctgaactctaattctttaagctctttcatttattaact |
42698970 |
T |
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| Q |
111 |
tggtatgaatggtatatacttaggtgatagcaaccatgatggcccttacttattagaaggggtgatgtccttgaagggtttggatggatgt-------tg |
203 |
Q |
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| T |
42698969 |
tgatattaatggaatatacataggtgatagcagccatgatggaccttacctattagaaggggtgatgtccttgaagggtttggatggatgttgctcaatg |
42698870 |
T |
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| Q |
204 |
ctaatgatcaaggtggtgcctcttgagcctgcaacacatcaatcacttgcttccga |
259 |
Q |
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| T |
42698869 |
ctaatgatcaaggtggtgcctcttgagcttgcaacacaacgatcacttgcttccga |
42698814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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