View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7458_low_9 (Length: 240)

Name: NF7458_low_9
Description: NF7458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7458_low_9
NF7458_low_9
[»] chr3 (2 HSPs)
chr3 (128-223)||(984346-984441)
chr3 (12-48)||(984229-984265)
[»] chr2 (2 HSPs)
chr2 (158-223)||(1589367-1589432)
chr2 (12-48)||(1589232-1589268)


Alignment Details
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 984346 - 984441
Alignment:
Q  128 gcacatatagttaatctatctgcctcctcattcgattgcagatcttgacaaaaaatgtataatccgttttttaaatttagaattgatatatattct 223  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  984346 gcacatatagttaatctatctgcctcctcattagattgcagatcttgacaaaaactgtataatccattttttaaatttagaattgatatatattct 984441  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 984229 - 984265
Alignment:
Q  12 attattctccacctctatcaaagtttactaatttggt 48  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  984229 attattctccacctcgatcaaagtttattaatttggt 984265  T

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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 1589367 - 1589432
Alignment:
Q  158 ttcgattgcagatcttgacaaaaaatgtataatccgttttttaaatttagaattgatatatattct 223  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1589367 ttcgattgcagatcttgacaaaaaatgtataatccattttttaaatttagaattgatatatattct 1589432  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 1589232 - 1589268
Alignment:
Q  12 attattctccacctctatcaaagtttactaatttggt 48  Q
    |||||||||||||||||||||||||||||||||||||    
T  1589232 attattctccacctctatcaaagtttactaatttggt 1589268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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