View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7459_high_2 (Length: 681)

Name: NF7459_high_2
Description: NF7459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7459_high_2
NF7459_high_2
[»] chr5 (1 HSPs)
chr5 (12-663)||(40092103-40092751)


Alignment Details
Target: chr5 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 12 - 663
Target Start/End: Complemental strand, 40092751 - 40092103
Alignment:
Q  12 gatggagaaccataacgaagaccaacgtttaggcaaataatcgagaggttggataagatcagcaaccatcttgctcaaaagaggtgttggaaggtatgga 111  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40092751 gatggagaaccataccgaagaccaacgtttaggcaaataatcgagaggttggataagatcagcaaccatcttgctcaaaagaggtgttggaaggtatgga 40092652  T
Q  112 aaacttaaattttcatcaattgttgaacctagttgtcttagtatagttttaatttattcagaagcaaatattagtactagtagtagttaccagaatgtag 211  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||| ||||||||    
T  40092651 aaacttaatttttcatcaattgttgaacctagttgtcttagtatagttttaatttattcagaagcaaattttagtactagtagt---taccggaatgtag 40092555  T
Q  212 ctttttatgatttttaccgtatcattggttatgtcctccatggcttacgtggccagtatagtatatggcagtttcaagacggattggtgccaatttaatc 311  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40092554 ctttttatgatttttacggtatcattggttatgtcctccatggcttacgtggccagtatagtatatggcagtttcaagacggattggtgccaatttaatc 40092455  T
Q  312 ggcggcaacgaggtcatttataattgtctttttgttcatgagatcttgtaccgtcattctcttaaataagagtgcacatgggcgagtgagatcatagatt 411  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40092454 ggcggcaacgaggtcatttataattgcctttttgttcatgagatcttgtaccgtcattctcttaaataagagtgtacatgggcgagtgagatcatagatt 40092355  T
Q  412 caaaatgtacaatttatgaatcttgcctttttgttcattttcacagtagcatacttttgatatacaggctctgactcctccatgcatccggaatctggag 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40092354 caaaatgtacaatttatgaatcttgcctttttgttcattttcacagtagcatacttttgatatacaggctctgactcctccatgcatccggaatctggag 40092255  T
Q  512 accttgtttaaggggtatcctacaagtcctggtagccgatcagctcgctctacagttagataaacaattgcccatacaaagcaacaagaacctcaatttt 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40092254 accttgtttaaggggtatcctacaagtcctggtagccgatcagctcgctctacagttagataaacaattgcccatacaaagcaacaagaacctcaatttt 40092155  T
Q  612 gtagtttcaagaaggaaaaaatatacaccggatcgtggtttccatatacttc 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40092154 gtagtttcaagaaggaaaaaatatacaccggatcgtggtttccatatacttc 40092103  T

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