View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7459_high_4 (Length: 554)
Name: NF7459_high_4
Description: NF7459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7459_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 30 - 536
Target Start/End: Original strand, 41331721 - 41332227
Alignment:
| Q |
30 |
cacaagttgtgcatgtataagtggaagattaggcaccaaattaatgcactatacaatatagtatgcccataccactatctttattctctactagagctta |
129 |
Q |
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| T |
41331721 |
cacaagttgtgcatgtataagtggaagattaggcaccaaattaatgcactatacaatatagtatgcccataccactatctttattctctactagagctta |
41331820 |
T |
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| Q |
130 |
aaatagaacagatagtgaaccactataaacttcaaaggtacatgcttgattgatatctatccatgaatgtaagtgggtgactagggaagagaaccacaca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41331821 |
aaatagaacagatagtgaaccactataaacttcaaaggtacatgcttgattgatatctatccatgaatgtaagtgggtgactagggaagagaaccacaca |
41331920 |
T |
|
| Q |
230 |
ttaaggagnnnnnnntatggctagaaaatggaaggcaaaagaaggtggaaccgaaaagtgcaaaatggtcttgcatagatacattttagactttgttcag |
329 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41331921 |
ttaaggagaaaaaaatatggctagaaaatggaaggcaaaagaaggtggaaccgaaaagtgcaaaatggtcttgcatagatacattttagactttgttcag |
41332020 |
T |
|
| Q |
330 |
ttcatagcatattttcaaactccacatgccaattcattaannnnnnnatatgaacattagacaactagcatgccaacctccacaaaattacctaatacat |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41332021 |
ttcatagcatattttcaaactccacatgccaattcattaatttttttatatgaacattagacaactagcatgccaacctccacaaaattacctaatacat |
41332120 |
T |
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| Q |
430 |
gtattattttttcacataatgaaattactttagggaagtcaattatgcaagcatttaannnnnnnaccttcctagttctaattttagtaattgtaagttt |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41332121 |
gtattattttttcacataatgaaattactttagggaagtcaattatgcaagcatttaatttttttaccttcctagttctaattttagtaattgtaagttt |
41332220 |
T |
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| Q |
530 |
cccccct |
536 |
Q |
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||||||| |
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| T |
41332221 |
cccccct |
41332227 |
T |
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