View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7459_high_5 (Length: 522)
Name: NF7459_high_5
Description: NF7459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7459_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 41 - 515
Target Start/End: Complemental strand, 11754291 - 11753817
Alignment:
| Q |
41 |
tttatcatctgctgaaaatggatctccatcctctcctgtggctccaaagttttccgacacagctgttaattctgcatcagaaaagaaagaatatccaatt |
140 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11754291 |
tttatcatctgctgaaaatgaatctccatcctctcctgtggctccaaagtttaccgacacagctgttaattctgcatcagaaaagaaagaatatccaatt |
11754192 |
T |
|
| Q |
141 |
gcacttccaagtgtagaaagcagcatgtacgccacagatgaatttcgcatgtattcgtttaaggttcttctttgtcctcgtgcatactctcatgattgga |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11754191 |
gcacttccaagtgtagaaagcagcatgtacgccacagatgaatttcgcatgtattcgtttaaggttcttctttgtcctcgtgcatactctcatgattgga |
11754092 |
T |
|
| Q |
241 |
gcgagtgtccttttaaacatcctcatgagaatgctcgaaggagagaccttagaaagttcacctacagctgtgtgccatgccctgattttaaaaaagggga |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11754091 |
ccgagtgtccttttaaacatcctcatgagaatgctcgaaggagagaccttagaaagttcacctacagctgtgtaccatgccctgattttaaaaaagggga |
11753992 |
T |
|
| Q |
341 |
ctgcaaacgtgcagatatgtgtgaatttgctcatggactattcgagacatggctacacccagatcggtatcgcacaattctctgcaaagatggtactagt |
440 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11753991 |
ctgcaaacgtgcagatacgtgtgaatttgctcatggactattcgagacatggctacacccagatcggtatcgcacaattctctgcaaagatggtactagt |
11753892 |
T |
|
| Q |
441 |
tgtgaccgaaaggtgtgcttttttgcacacttagctaaagagctgcgtccaatatatgtgtccacaggttctgct |
515 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||| |
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| T |
11753891 |
tgtgaccgaaaggtgtgcttttttgcacacttagctgaagagctgcgtccaatatatgtctccactggatctgct |
11753817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 53 - 491
Target Start/End: Complemental strand, 11688626 - 11688182
Alignment:
| Q |
53 |
tgaaaatggatctccatcctctcctgtggctccaaagttttccgacacagctgttaattctgcatcagaaaagaaagaatatccaattg------cactt |
146 |
Q |
| |
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|||||| || |||||||||||||| |||||||||||||| ||||||||||||||| |||| || ||||||||||| |||||||||||| || || |
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| T |
11688626 |
tgaaaaggggtctccatcctctcccgtggctccaaagttgaccgacacagctgttagttctacaccagaaaagaaaaaatatccaattgatccatcaatt |
11688527 |
T |
|
| Q |
147 |
ccaagtgtagaaagcagcatgtacgccacagatgaatttcgcatgtattcgtttaaggttcttctttgtcctcgtgcatactctcatgattggagcgagt |
246 |
Q |
| |
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|| | || || |||||| || ||||||||||||||||||||||||||| | ||||| |||||||||| |||||||||| ||||| |||||| ||||| |
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| T |
11688526 |
cctgatataagaaacagcatatatgccacagatgaatttcgcatgtattcggtcaaggtccttctttgtcatcgtgcatacactcataattggaccgagt |
11688427 |
T |
|
| Q |
247 |
gtccttttaaacatcctcatgagaatgctcgaaggagagaccttagaaagttcacctacagctgtgtgccatgccctgattttaaaaaaggggactgcaa |
346 |
Q |
| |
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|||||||| | |||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| |
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| T |
11688426 |
gtcctttttaccatcctaatgagaatgcacgaaggagagaccctagaaagttcacctacagctgtgtgccatgcgctgattttaaaactagggattgcaa |
11688327 |
T |
|
| Q |
347 |
acgtgcagatatgtgtgaatttgctcatggactattcgagacatggctacacccagatcggtatcgcacaattctctgcaaagatggtactagttgtgac |
446 |
Q |
| |
|
||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||| ||||||||||| ||||||||||| ||||||| |||| || |
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| T |
11688326 |
acgtggtgatatgtgtgaatatgctcatggagtattcgagacctggctacatccagatcagtatcgcacaaggctctgcaaagagggtactaattgtaac |
11688227 |
T |
|
| Q |
447 |
cgaaaggtgtgcttttttgcacacttagctaaagagctgcgtcca |
491 |
Q |
| |
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||||||||||||||||||||||| | ||| |||||||||||||| |
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|
| T |
11688226 |
cgaaaggtgtgcttttttgcacatgttgctgaagagctgcgtcca |
11688182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 41 - 515
Target Start/End: Complemental strand, 9315020 - 9314540
Alignment:
| Q |
41 |
tttatcatctgctgaaaatggatctccatcctctcctgtggctccaaagttttccgacacagctgttaattctgcatcagaaaagaaagaatatccaatt |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| | || ||||||||||||||| |||||||||||||||| |||||| || |
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| T |
9315020 |
tttatcatctgctgaaaatggatctccatcctctcctgtggctcccaagtttacagatacagctgttaattctacatcagaaaagaaagagtatccagtt |
9314921 |
T |
|
| Q |
141 |
g------cacttccaagtgtagaaagcagcatgtacgccacagatgaatttcgcatgtattcgtttaaggttcttctttgtcctcgtgcatactctcatg |
234 |
Q |
| |
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| | ||||| || ||| ||||||||| |||||||||||||| ||||||||||| || ||||||| || |||| |||||||||||||||||| |
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| T |
9314920 |
gacccatctcttcctgacataaaaaacagcatgtatgccacagatgaattccgcatgtattcattcaaggttcgtccttgttctcgtgcatactctcatg |
9314821 |
T |
|
| Q |
235 |
attggagcgagtgtccttttaaacatcctcatgagaatgctcgaaggagagaccttagaaagttcacctacagctgtgtgccatgccctgattttaaaaa |
334 |
Q |
| |
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|||||| |||||||||||| |||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| || |
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| T |
9314820 |
attggactgagtgtccttttgtgcatcctggagagaatgctcgaaggagagaccctagaaagtttcactacagctgtgtgccatgccctgattttaggaa |
9314721 |
T |
|
| Q |
335 |
aggggactgcaaacgtgcagatatgtgtgaatttgctcatggactattcgagacatggctacacccagatcggtatcgcacaattctctgcaaagatggt |
434 |
Q |
| |
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||||| ||| |||| | ||||||||||||| |||||||||| |||||||| ||||||||||||| || |||||| |||| || |||||||| ||| |
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| T |
9314720 |
aggggcttgccgacgttcggatatgtgtgaatatgctcatggagtattcgagtgctggctacacccagctcagtatcggacaaggctgtgcaaagacggt |
9314621 |
T |
|
| Q |
435 |
actagttgtgaccgaaaggtgtgcttttttgcacacttagctaaagagctgcgtccaatatatgtgtccacaggttctgct |
515 |
Q |
| |
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| ||||| |||||| ||||||||| || || |||| | || ||||||||||||| | ||||||||||| ||||||||| |
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| T |
9314620 |
atgggttgtaaccgaagggtgtgcttcttcgctcactcacctgaagagctgcgtccgctgtatgtgtccactggttctgct |
9314540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 11754389 - 11754360
Alignment:
| Q |
18 |
aaaacaagtcttgaagaactgcttttatca |
47 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
11754389 |
aaaacaagtcttgaagaactgcttttatca |
11754360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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