View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7459_low_1 (Length: 684)
Name: NF7459_low_1
Description: NF7459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7459_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 203 - 666
Target Start/End: Original strand, 11901800 - 11902263
Alignment:
| Q |
203 |
tcatcatgatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgtt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11901800 |
tcatcatgatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgtt |
11901899 |
T |
|
| Q |
303 |
ctagatgcgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtgg |
402 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11901900 |
ctagatgcgatatttccaaccggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtga |
11901999 |
T |
|
| Q |
403 |
caatgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatcc |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902000 |
caatgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatcc |
11902099 |
T |
|
| Q |
503 |
aagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgt |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11902100 |
aagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagcttagtgatggaactaggtagcttttctatgttgt |
11902199 |
T |
|
| Q |
603 |
tatgggaaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaat |
666 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11902200 |
tatgagaaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaat |
11902263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 206 - 648
Target Start/End: Complemental strand, 11860751 - 11860312
Alignment:
| Q |
206 |
tcatgatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttcta |
305 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| |||||||||| ||| ||||||| |||||||||||| |||||||||||| |||||||||| | |
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|
| T |
11860751 |
tcatgatcccatcttagagtcaagaactcgaggtgttgcttatttttcaaaaaatcatctttagcagcttcctttgatggagagaacttgacttgttcaa |
11860652 |
T |
|
| Q |
306 |
gatgcgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtggcaa |
405 |
Q |
| |
|
|||| || ||||| || ||||||||||||||||||||||| |||||| |||||||||||| |||| |||||||||||||||| || || |||| ||| |
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|
| T |
11860651 |
gatgagaaatttccaagtggcctctcagattgttaagatctgtgagtgatcttagtcctcccgtga---cttgtttcttgctggctacgaaaagtgacaa |
11860555 |
T |
|
| Q |
406 |
tgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaag |
505 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||| | ||||||||| ||||||||||||| | |||| | |
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|
| T |
11860554 |
tgtttgcaaagaagtaagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatgattgaggcaactcaaatcgtccatg |
11860455 |
T |
|
| Q |
506 |
tcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttat |
605 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || | |||||||||||||||||||||||| ||||| ||| ||||||| ||||| ||||||||||||| |
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|
| T |
11860454 |
tcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataagatttgttatgcaactaggaagcttctctatgttgttat |
11860355 |
T |
|
| Q |
606 |
gggaaagatctagatacctcaagtacttcacctcctcaataga |
648 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11860354 |
gggaaagatctagatacctcaagtacttcacatcctcaataga |
11860312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 203 - 657
Target Start/End: Complemental strand, 11828619 - 11828168
Alignment:
| Q |
203 |
tcatcatgatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgtt |
302 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||||||| || |||||||||||| ||| ||||| |
|
|
| T |
11828619 |
tcatcgtgatcccatcttagagtcaagaactcaaggtgttgtttatttttcaaaaaatcatctttagcagcttcttttgatggagagaacttgatttgtt |
11828520 |
T |
|
| Q |
303 |
ctagatgcgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtgg |
402 |
Q |
| |
|
| |||||| ||||| || ||||| ||||||||||||||||| |||||| |||||||||||| |||| |||||||||||||||| || || |||| |
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|
| T |
11828519 |
ccagatgcataatttccaagtggcccctcagattgttaagatctgtgagtgatcttagtcctcccgtga---cttgtttcttgctggctacgaaaagtga |
11828423 |
T |
|
| Q |
403 |
caatgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatcc |
502 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||| |||||| || | |||||||||||| |||||||||| ||||| |
|
|
| T |
11828422 |
caatgtttgcaaagaagtgagcttacttattccacttggcatttgagttagatccaagcatccatctaagtcaagatggttaaggcaactcaaatcatcc |
11828323 |
T |
|
| Q |
503 |
aagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgt |
602 |
Q |
| |
|
| ||||||||||||||| ||||||| |||||| | || | |||||| ||||||||||||||||| ||||| ||| ||||||| ||||| || ||||||| |
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|
| T |
11828322 |
atgtcttttggcaattctttgaggacatgacatcgagacagtttcaacgtttgcaagtggataagatttgttatgcaactaggaagcttctccatgttgt |
11828223 |
T |
|
| Q |
603 |
tatgggaaagatctagatacctcaagtacttcacctcctcaatagatgttggaac |
657 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
11828222 |
tatgtgaaagatctagatacctcaagtacttcacatcctcaatagagcttggaac |
11828168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 206 - 648
Target Start/End: Complemental strand, 12039516 - 12039077
Alignment:
| Q |
206 |
tcatgatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttcta |
305 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| || ||| ||||||| ||||||||||| |||| |||||| ||| | |||||| |||||||||| | |
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|
| T |
12039516 |
tcatgatcccatcttagagtcaagaacccaaggtattttttgtttttcaaaaattcatctttagcaatttccttggattgcgagaacttgacttgttcca |
12039417 |
T |
|
| Q |
306 |
gatgcgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtggcaa |
405 |
Q |
| |
|
||||||| ||||| | || |||||||| ||||| ||||| |||||||||||||||||||| || | | | ||||||||| || |||||||||| ||| |
|
|
| T |
12039416 |
gatgcgaaatttccatgtgacctctcagtttgttgagatcggtgagttctcttagtcctcctgtaa---cgtatttcttgctagctacaaagagtgacaa |
12039320 |
T |
|
| Q |
406 |
tgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaag |
505 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||| | |
|
|
| T |
12039319 |
tgtttgtaaagaagtgagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatggttgaggcaactcaaatcatccatg |
12039220 |
T |
|
| Q |
506 |
tcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttat |
605 |
Q |
| |
|
|||||||||||||||||||| | |||||||| || | |||||| ||||||||||||||||| |||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
12039219 |
tcttttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgcaagtggataagagttgtgatgcaactaggaagcttctctatgttgttat |
12039120 |
T |
|
| Q |
606 |
gggaaagatctagatacctcaagtacttcacctcctcaataga |
648 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12039119 |
gagaaagatctagatacctcaagtacttcacctcttcaataga |
12039077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 212 - 663
Target Start/End: Complemental strand, 11732393 - 11731942
Alignment:
| Q |
212 |
tcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttctagatgcg |
311 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||||||||| ||||||||||| ||| ||||| || |||||||||||| ||||||| || |||||| |
|
|
| T |
11732393 |
tcccatcttagagtcaaatgctgaatgtgttgtttatttttcacaaattcatctttagccgcttcgttggatggagagaacttgacttgctccagatgca |
11732294 |
T |
|
| Q |
312 |
atatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtggcaatgtttg |
411 |
Q |
| |
|
| ||||| | | | | | || ||||| |||| |||||||| ||||||||||| ||| | ||||||||||||||||| || |||| ||||||||| |
|
|
| T |
11732293 |
aaatttccagtttgtccttgaggttgttgagatttgtgagttcccttagtcctccggtgtcagcatgtttcttgctggccacgaaaagtgacaatgtttg |
11732194 |
T |
|
| Q |
412 |
taaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtctttt |
511 |
Q |
| |
|
||| |||||||| |||| ||| || ||||||||||||||||||||| ||| |||||||||| ||||||| |||||| | |||| | | |||||||||| |
|
|
| T |
11732193 |
taaggaagtgagtttatctatcccggttggcatgtgagttagatccaagcaaccctcaatgttaagatggctgaggcgagtcagatccttcaagtctttt |
11732094 |
T |
|
| Q |
512 |
ggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttatgggaaa |
611 |
Q |
| |
|
|||||||||||||||| ||||| | || | |||||| |||||||| |||||||||||||||||| ||||||| ||||| ||||||||||| ||||| | |
|
|
| T |
11732093 |
ggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaactaggaagcttctctatgttgttgtgggata |
11731994 |
T |
|
| Q |
612 |
gatctagatacctcaagtacttcacctcctcaatagatgttggaaccatctt |
663 |
Q |
| |
|
|||||||| |||||||||| |||| |||||||||||| ||||| || ||||| |
|
|
| T |
11731993 |
gatctagaaacctcaagtatttcatctcctcaatagaggttggtacaatctt |
11731942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 7370601 - 7370662
Alignment:
| Q |
23 |
tccagaacttgacactttagtttaccctccacaatttgcatctcatctccggtagtttcaaa |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7370601 |
tccagaacttgacactttagtttaccctccacaatttgcatctcatctccggtagtttcaaa |
7370662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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