View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7459_low_3 (Length: 565)

Name: NF7459_low_3
Description: NF7459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7459_low_3
NF7459_low_3
[»] chr1 (2 HSPs)
chr1 (1-565)||(9436561-9437130)
chr1 (484-540)||(9389950-9390006)


Alignment Details
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Complemental strand, 9437130 - 9436561
Alignment:
Q  1 ctgcaagattaacatcttacatataattaggtgtgacgtccgttaatcttgatgtacttttatagaaaatagtttaatatttttgcaaagatttacagag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9437130 ctgcaagattaacatcttacatataattaggtgtgacgtccgttaattttgatgtactttaatagaaaatagtttaatatttttgcaaagatttacagag 9437031  T
Q  101 gttatatgttataaactttcgattgaacggtgtaacacaaatgttgaaacgaaatatatgaataaagtttaatccactaagatattagaagagtgatagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9437030 gttatatgttataaactttcgattgaacggtgtaacacaaatgttgaaacgaaatatatgaataaagtttaatccactaagatattagaagagtgatagg 9436931  T
Q  201 tttacaagtgttgaattgcttctcaagatttgcaattaataagaataaagttaaattgataacatttgagagaataaacttcaagaagaacatgactata 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9436930 tttacaagtgttgaattgcttctcaagatttgcaattaataagaataaagttaaattgataacatttgagagaataaatttcaagaagaacatgactata 9436831  T
Q  301 agagaattcaaatataaactctaattgtaactcctaaatccttatttattatcagagcactaca-tctgcgcttaataaacaccctatt-----atgcac 394  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||     ||||||    
T  9436830 agagaattccaatataaactctaattgtagctcctaaatccttatttattatcagagcactacattctgcgtttaataaaca-cctattactcaatgcac 9436732  T
Q  395 taatttcacagtgatcctcttgtcactgaacttatacttcacaacatcgataccacgttataccgattaaggggtttgtaagtaaatgatgtataggaat 494  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9436731 taatttcacagtgatcctcttgttactgaacttatacttcacaacatcgaaaccacgttataccgattaaggggtttgtaagtaaatgatgtataggaat 9436632  T
Q  495 tgtaagggagtgactcatgaccagatgatacgttgtttgtgtcaagcagatgaagccgtattaatttaggt 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9436631 tgtaagggagtgactcatgaccagatgatacgttgtttgtgtcaagcagatgaagccatattaatttaggt 9436561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 540
Target Start/End: Complemental strand, 9390006 - 9389950
Alignment:
Q  484 tgtataggaattgtaagggagtgactcatgaccagatgatacgttgtttgtgtcaag 540  Q
    |||||| |||||||||| |||||| |||||| |||||||| |||| |||||||||||    
T  9390006 tgtatatgaattgtaagagagtgattcatgatcagatgatgcgttttttgtgtcaag 9389950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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