View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7459_low_6 (Length: 501)
Name: NF7459_low_6
Description: NF7459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7459_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 489
Target Start/End: Original strand, 34059765 - 34060232
Alignment:
| Q |
17 |
cagtgaagcatgctgttaaaacagtatgaatgaagataaaaacattcaaggatgttcatggggctcaagagtgcatcgattttcattatcatattatcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34059765 |
cagtgaagcatgctgttaaaacagtatgaatgaagataaaaacattcaaggatgttcatggggctcgagagtgcatcgattttcattatcatattatcaa |
34059864 |
T |
|
| Q |
117 |
gtttattcaggaagtcaggtggacaactgaaaagcactgcggagattgaagagagcctgcaatgttggctcgcgttcatagtttccaactctaaaagagc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34059865 |
gtttattcaggaagtcaggtggacaactgaaaagcactgcggagattgaagagagcctgcaatgttggctcgcgttcatagtttccaactctaaaagagc |
34059964 |
T |
|
| Q |
217 |
agtacaacagtgcatgcttcctagtatagctgnnnnnnnnnnnngacagacttcgataaaatcaaccaatcatcacagaaaacagttgattcaattcaga |
316 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34059965 |
agtacaacagtgcatgctacctagtatagctgtttttttt-----acatacttcgataaaatcaaccaatcatcacagaaaacagttgattcaattcaga |
34060059 |
T |
|
| Q |
317 |
gattgagagttaagtttcaaggcaattttgatctgtactcaattgtattcatagttgatacaagatcatcagtatcggttagtaaactcgctcatcacat |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34060060 |
gattgagagttaagtttcaaggcaattttgatctgtactcaattgtattcatagttgatgcaagatcatcagtatcagttagtaaactcgctcatcacat |
34060159 |
T |
|
| Q |
417 |
cagaaaaaagtgcaaaataattctccaaagagtacgacaactttatcaactttgcaatgatcttacacaggtt |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34060160 |
cagaaaaaagtgcaaaataattctccaaagagtacgacaactttatcaactttgcaatgatcttacacaggtt |
34060232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 146 - 479
Target Start/End: Complemental strand, 22232376 - 22232039
Alignment:
| Q |
146 |
aaaagcactgcggagattgaagagagcctgcaatgttggctcgcgttcatagtttccaactctaaaagagcagtacaacagtgcatgcttcctagtatag |
245 |
Q |
| |
|
||||||||||| |||||||||||| |||||| |||||| ||||||||||||||| || |||||||||| |||||| |||||||| || ||| ||| |
|
|
| T |
22232376 |
aaaagcactgcagagattgaagaggatttgcaatattggcttaggttcatagtttccaattccaaaagagcaggacaacaatgcatgctgccaagtgtag |
22232277 |
T |
|
| Q |
246 |
ctgnnnnnnnnnnnngacagacttcgataaaatcaaccaatcatcacagaa---------aacagttgattcaattcagagattgagagttaagtttcaa |
336 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||| || ||| || |||||||||||||||||||||| ||||||||| |
|
|
| T |
22232276 |
ctattgttctc-----acacacttcgataaaatcaaccaatcatcacaaaatctgcagcaaacggtagattcaattcagagattgagagacaagtttcaa |
22232182 |
T |
|
| Q |
337 |
ggcaattttgatctgtactcaattgtattcatagttgatacaagatcatcagtatcggttagtaaactcgctcatcacatcagaaaaaagtgcaaaataa |
436 |
Q |
| |
|
||| || ||||| | ||| || |||||||| ||||| |||||||||||| ||| ||| |||||||| ||||||||||| |||| | |||||||| | |
|
|
| T |
22232181 |
ggctatgttgatttctaccaaactgtattcacggttgacgcaagatcatcagcatcagttggtaaactcactcatcacatccgaaagacgtgcaaaacag |
22232082 |
T |
|
| Q |
437 |
ttctccaaagagtacgacaactttatcaactttgcaatgatct |
479 |
Q |
| |
|
|||| |||||||||| || | |||||||||||||||| ||||| |
|
|
| T |
22232081 |
ttctgcaaagagtaccacgagtttatcaactttgcaacgatct |
22232039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 22232573 - 22232520
Alignment:
| Q |
17 |
cagtgaagcatgctgttaaaacagtatgaatgaagataaaaacattcaaggatg |
70 |
Q |
| |
|
||||| |||| ||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22232573 |
cagtggagcaggctgtcaaaacagttggaatgaagataaaaacattcaaggatg |
22232520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University