View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7459_low_7 (Length: 412)
Name: NF7459_low_7
Description: NF7459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7459_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 404
Target Start/End: Complemental strand, 41595227 - 41594843
Alignment:
| Q |
20 |
tgttggtgttggagtaggagttggagttggaattggattagcgaattctggacaaaatgtttctaaatggggtcctaattattctttctcttctaatgct |
119 |
Q |
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| T |
41595227 |
tgttggtgttggagtaggagttggagttggaattggattagcgaattctggacaaaatgtttctaaatggggtcctaattattctttctcttctaatgct |
41595128 |
T |
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| Q |
120 |
gttactgctgataaaattgaacatgaaatgttacgccaaattgttgatggcagagaaagcaacgttacttttgataaattcccttattatctaaggcatg |
219 |
Q |
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| T |
41595127 |
gttactgctgataaaattgaacatgaaatgttacgccaaattgttgatggcagagaaagcaacgttacttttgataaattcccttattatctaaggcatg |
41595028 |
T |
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| Q |
220 |
cttactttatgctaattaatcaacctttgatctttcatttcttttcataatcacttattttgtttcttgataacagtgagcagacgcgggttttgcttac |
319 |
Q |
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| T |
41595027 |
cttactttatgctaattaatcaacctttgatctttcatttcttttcataatcacttattttgtttcttgataacagtgagcagacgcgggttttgcttac |
41594928 |
T |
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| Q |
320 |
aagtgctgcatatgttcatttaaagcatgctgaagtttctaaatatacgcgtaatcttgctcctgctagcagaactattcttctc |
404 |
Q |
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| T |
41594927 |
aagtgctgcatatgttcatttaaagcatgctgaagtttctaaatatacgcgtaatcttgctcctgctagcagaactattcttctc |
41594843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 292 - 400
Target Start/End: Original strand, 2486600 - 2486708
Alignment:
| Q |
292 |
acagtgagcagacgcgggttttgcttacaagtgctgcatatgttcatttaaagcatgctgaagtttctaaatatacgcgtaatcttgctcctgctagcag |
391 |
Q |
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||||||||||||| || || ||||||||||||||||| ||||| |||||||||||||| || |||||||||||||| || |||||||||||||| ||| | |
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| T |
2486600 |
acagtgagcagacacgcgtgttgcttacaagtgctgcttatgtccatttaaagcatgcagaggtttctaaatatacacggaatcttgctcctgcaagccg |
2486699 |
T |
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| Q |
392 |
aactattct |
400 |
Q |
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|||||||| |
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| T |
2486700 |
gactattct |
2486708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 2486087 - 2486138
Alignment:
| Q |
160 |
ttgttgatggcagagaaagcaacgttacttttgataaattcccttattatct |
211 |
Q |
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|||||||||| ||||||||||| || || |||||||| |||||||||||||| |
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| T |
2486087 |
ttgttgatggtagagaaagcaatgtcacctttgataatttcccttattatct |
2486138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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