View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7459_low_8 (Length: 372)

Name: NF7459_low_8
Description: NF7459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7459_low_8
NF7459_low_8
[»] chr1 (11 HSPs)
chr1 (80-362)||(48629162-48629444)
chr1 (84-340)||(48661850-48662118)
chr1 (163-353)||(48667530-48667720)
chr1 (204-352)||(48617739-48617887)
chr1 (204-313)||(11547679-11547788)
chr1 (200-319)||(48585771-48585890)
chr1 (200-319)||(48640344-48640463)
chr1 (203-298)||(48657015-48657110)
chr1 (204-352)||(48653568-48653716)
chr1 (121-181)||(48653473-48653533)
chr1 (121-177)||(11547584-11547640)
[»] chr3 (1 HSPs)
chr3 (202-307)||(19665140-19665245)
[»] chr8 (3 HSPs)
chr8 (207-307)||(27224421-27224521)
chr8 (211-307)||(27228628-27228724)
chr8 (198-297)||(25892501-25892601)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 80 - 362
Target Start/End: Original strand, 48629162 - 48629444
Alignment:
Q  80 ctgcctcccaacaagctcaagctctgcatggtcaatggaaccatcatctagtaaacaatgatcaaagaactcaaaagtgaggcaaccatcgcctattgga 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48629162 ctgcctcccaacaagctcaagctctgcatggtcaatggaaccatcatctagtaaacaatgatcaaagaactcgaaagtgaggcaaccatcgcctattgga 48629261  T
Q  180 gttgctaatttgttggtgattcgcatgtctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcctagtctaa 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48629262 gttgctaatttgttggtgattcgcatgtctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcctagtctaa 48629361  T
Q  280 gaagagggtttatgtgtccttgtgctggtaaagacacaagtaggatatgaatgggaacttcggatcccatttttccttttctt 362  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  48629362 gaagagggtttatgtgtccttgtgctggaaaagaaacaagtaggatatgaaggggaacttcggatcccatttttccttttctt 48629444  T

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Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 84 - 340
Target Start/End: Original strand, 48661850 - 48662118
Alignment:
Q  84 ctcccaacaagctcaagctctgcatggtcaatggaaccatcatctagtaaacaatgatcaaagaactcaaaagtgaggcaaccatcgcctattggagttg 183  Q
    ||||||| | ||||||| |||||||||| || |||||||| ||||||||||| ||||||||||||||| ||| ||||  ||||||| ||||| |||||||    
T  48661850 ctcccaatacgctcaagttctgcatggttaacggaaccattatctagtaaactatgatcaaagaactcgaaaatgagagaaccatcacctatcggagttg 48661949  T
Q  184 ctaatttgttggtgat------------tcgcatgtctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcc 271  Q
    ||||||||||||||||            || |||||||||||| |||||||||||||| || || |||||||||||||| |||||||||||||| |||||    
T  48661950 ctaatttgttggtgatgtcgtcaacaattcccatgtctttgccagctttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcc 48662049  T
Q  272 tagtctaagaagagggtttatgtgtccttgtgctggtaaagacacaagtaggatatgaatgggaacttc 340  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||    
T  48662050 tagtctaagaagagggtttatgtgtccttgtgctggaaaagaaacaaggaggatatgaatgggagcttc 48662118  T

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Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 163 - 353
Target Start/End: Original strand, 48667530 - 48667720
Alignment:
Q  163 aaccatcgcctattggagttgctaatttgttggtgattcgcatgtctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaag 262  Q
    ||||||| || |||||||| ||||||||||||||||||||||| | ||||||  |||| ||||||||  | ||||||||||| |||||||||||||||||    
T  48667530 aaccatcaccaattggagtagctaatttgttggtgattcgcatatttttgccacctttttctgttgtgatgaagatgacagaagcaccctttgcagcaag 48667629  T
Q  263 acattttcctagtctaagaagagggtttatgtgtccttgtgctggtaaagacacaagtaggatatgaatgggaacttcggatcccattttt 353  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| | | |||||||| ||||||||    
T  48667630 acatttacctagtctaagaagagggtttatgtgtccttgtgctggaaaagaaacaaggaggatgtgaattgaagcttcggatgccattttt 48667720  T

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Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 204 - 352
Target Start/End: Complemental strand, 48617887 - 48617739
Alignment:
Q  204 atgtctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcctagtctaagaagagggtttatgtgtccttgtg 303  Q
    ||||||||||| ||||||||||||||  | ||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  48617887 atgtctttgccagctttctctgttgtgatgaagatgacagaagcaccctttgcagcaagacactttgctagtctaagaagagggtttatgtgtccttgtg 48617788  T
Q  304 ctggtaaagacacaagtaggatatgaatgggaacttcggatcccatttt 352  Q
    ||||  |||| | ||| ||||||||| ||    ||||||||||||||||    
T  48617787 ctggataagagataagaaggatatgagtgtttgcttcggatcccatttt 48617739  T

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Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 204 - 313
Target Start/End: Original strand, 11547679 - 11547788
Alignment:
Q  204 atgtctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcctagtctaagaagagggtttatgtgtccttgtg 303  Q
    ||||||||||| ||||||| ||||||  | ||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||     
T  11547679 atgtctttgccagctttctttgttgtgatgaagatgacagaagcaccctttgcagcaagacactttgctaatctaagaagagggtttatgtgtccttgtc 11547778  T
Q  304 ctggtaaaga 313  Q
    |||| |||||    
T  11547779 ctggaaaaga 11547788  T

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Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 48585771 - 48585890
Alignment:
Q  200 tcgcatgtctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcctagtctaagaagagggtttatgtgtcct 299  Q
    |||||||| |||||| ||  |||||||||| || ||||| |||| ||||||||||||||||||| | |||||||||| || |||| ||||||||||||||    
T  48585771 tcgcatgtttttgccagccgtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtcct 48585870  T
Q  300 tgtgctggtaaagacacaag 319  Q
    |||||||| ||||| |||||    
T  48585871 tgtgctggaaaagagacaag 48585890  T

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Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 48640344 - 48640463
Alignment:
Q  200 tcgcatgtctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcctagtctaagaagagggtttatgtgtcct 299  Q
    |||||||| |||||| ||  |||||||||| || ||||| |||| ||||||||||||||||||| | |||||||||| || |||| ||||||||||||||    
T  48640344 tcgcatgtttttgccagccgtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtcct 48640443  T
Q  300 tgtgctggtaaagacacaag 319  Q
    |||||||| ||||| |||||    
T  48640444 tgtgctggaaaagagacaag 48640463  T

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Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 298
Target Start/End: Original strand, 48657015 - 48657110
Alignment:
Q  203 catgtctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcctagtctaagaagagggtttatgtgtcc 298  Q
    |||||||||||| |||||||  ||||| || ||||||||||| | |||||||||||||||||| || |||||| ||||||||| |||||| |||||    
T  48657015 catgtctttgccagctttctgcgttgtggtgaagatgacagaagaaccctttgcagcaagacacttccctagtttaagaagagagtttatatgtcc 48657110  T

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Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 352
Target Start/End: Original strand, 48653568 - 48653716
Alignment:
Q  204 atgtctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcctagtctaagaagagggtttatgtgtccttgtg 303  Q
    |||||||| || ||| | ||||||||  | || |||||||| |||||||||||||||| ||| ||| |||| ||||| | ||| || |||||||||||||    
T  48653568 atgtcttttccagctctttctgttgtgatgaaaatgacagaagcaccctttgcagcaacacactttgctagactaagcaaaggattaatgtgtccttgtg 48653667  T
Q  304 ctggtaaagacacaagtaggatatgaatgggaacttcggatcccatttt 352  Q
    ||||  |||| | ||| |||| |||||||||| |||| |||| ||||||    
T  48653668 ctggataagaaataaggaggacatgaatgggagcttccgatctcatttt 48653716  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 48653473 - 48653533
Alignment:
Q  121 catcatctagtaaacaatgatcaaagaactcaaaagtgaggcaaccatcgcctattggagt 181  Q
    ||||||||  |||||||| |||||||||||||||||||||  ||||||| || ||||||||    
T  48653473 catcatcttctaaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagt 48653533  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 11547584 - 11547640
Alignment:
Q  121 catcatctagtaaacaatgatcaaagaactcaaaagtgaggcaaccatcgcctattg 177  Q
    |||||||| |||||| || |||||||||||||||||||||  ||||||  |||||||    
T  11547584 catcatcttgtaaaccatcatcaaagaactcaaaagtgagagaaccattacctattg 11547640  T

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Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 202 - 307
Target Start/End: Complemental strand, 19665245 - 19665140
Alignment:
Q  202 gcatgtctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcctagtctaagaagagggtttatgtgtccttg 301  Q
    ||||||||||||| ||||||||||| ||  | |||||||| || | |||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  19665245 gcatgtctttgccagctttctctgtagtgatgaagatgactgaagaaccctttgcagcaagacactttgctagtctaagaagagggtttatgtgtccttg 19665146  T
Q  302 tgctgg 307  Q
    ||||||    
T  19665145 tgctgg 19665140  T

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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 207 - 307
Target Start/End: Original strand, 27224421 - 27224521
Alignment:
Q  207 tctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcctagtctaagaagagggtttatgtgtccttgtgctg 306  Q
    |||||||| ||||||||||||||  | ||||| ||||| | ||||||||  |||||||| |||||||||||||| | ||| |||||||||||||||||||    
T  27224421 tctttgccagctttctctgttgtgatgaagataacagaagaaccctttgatgcaagacactttcctagtctaagcataggatttatgtgtccttgtgctg 27224520  T
Q  307 g 307  Q
    |    
T  27224521 g 27224521  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 307
Target Start/End: Original strand, 27228628 - 27228724
Alignment:
Q  211 tgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcctagtctaagaagagggtttatgtgtccttgtgctgg 307  Q
    |||| |||||||| |||||  | ||||| ||||| | ||||||||  |||||||| ||||||| |||||| | ||| ||||||||||||||||||||    
T  27228628 tgccagctttctcagttgtgatgaagataacagaagaaccctttgatgcaagacactttcctaatctaagcataggatttatgtgtccttgtgctgg 27228724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 297
Target Start/End: Complemental strand, 25892601 - 25892501
Alignment:
Q  198 attcgcatgtctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcc-tagtctaagaagagggtttatgtgt 296  Q
    |||||||||| | |||| ||| | |||||||| || ||||||| ||| |||||| ||||||||||| ||||||| ||| | ||||||| |||||| ||||    
T  25892601 attcgcatgtttgtgccggctgtttctgttgtggtgaagatgatagatgcaccccttgcagcaagagattttccttagaccaagaagatggtttaggtgt 25892502  T
Q  297 c 297  Q
    |    
T  25892501 c 25892501  T

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