View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7460_high_1 (Length: 723)

Name: NF7460_high_1
Description: NF7460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7460_high_1
NF7460_high_1
[»] chr5 (3 HSPs)
chr5 (17-707)||(22066205-22066884)
chr5 (17-551)||(19022312-19022852)
chr5 (553-707)||(19022831-19022985)
[»] chr7 (3 HSPs)
chr7 (17-413)||(4486882-4487283)
chr7 (600-707)||(4487288-4487395)
chr7 (400-467)||(2269142-2269209)
[»] chr3 (1 HSPs)
chr3 (17-356)||(10316539-10316883)
[»] chr8 (2 HSPs)
chr8 (471-707)||(22619576-22619812)
chr8 (74-127)||(30342482-30342535)
[»] scaffold0131 (2 HSPs)
scaffold0131 (168-463)||(13464-13759)
scaffold0131 (20-121)||(14100-14201)
[»] chr6 (2 HSPs)
chr6 (343-467)||(12287137-12287263)
chr6 (346-456)||(32091933-32092045)
[»] chr1 (1 HSPs)
chr1 (343-468)||(9391906-9392033)


Alignment Details
Target: chr5 (Bit Score: 561; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 17 - 707
Target Start/End: Original strand, 22066205 - 22066884
Alignment:
17 atgaaacacactgaacatattgcctaaagacatagaactcttagcaatattaatagccatacatccatgaatattttacatctatttttatttctattgt 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
22066205 atgaaacacactaaacatattgcctaaagacatagaactcttagcaatactaatagccatacatccatgaatattttacatcaatttttatttctattgt 22066304  T
117 ttgtttctgaacacagaagtagcacagacccaaaaaataaagcaaaatacagccaccgtaattacgcccattgatcaccccacaacctgctagacacaat 216  Q
    |||||||||||||||           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||      
22066305 ttgtttctgaacaca-----------gacccaaaaaataaagcaaaatacagccaccgtaattacgcctattgatcaccccacaacctgctggacacagc 22066393  T
217 ccccatgcaacaaagaaaaaactgcactgcacatcaagtaaaaacgcagcctgcagacccacaaaaacccgcaaaacctccaacacaaccggcagcagcc 316  Q
    ||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
22066394 ccccacgcaacaaagaaaaaactgcactgcacatattgtaaaaacgcagcctgcagacccacaaaaacccgcaaaatctccaacacaacaggcagcagcc 22066493  T
317 gtagcgcaacacaacacaacacctatcacagtcctctagtttgtgttccattcgaacgaaaaaatgataagacaagaatctagttcacaaaacagaacct 416  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
22066494 gtagcacaacacaacacaacacctatcacagtcctctagtttgtgttccattcgaaagaaaaaatgataagacaagaatctaattcacaaaacagaacct 22066593  T
417 acctttggttccaagttgcaatgtactaagcttttctttttgacttgcttttgtctatgttagatcagataggtttatgaggtctatgttaccttgtaac 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
22066594 acctttggttccaagttgcaatgtactaagcttttctttttgacttgcttttgtctatgttagatcagataggtttatgaggtctatggtaccttgtaac 22066693  T
517 ggagttaagctcagataaactatgccaactcaaagtgataaactatgtcaactcaaagtgctacttaaggactactgaaacatgataacctcggcctatg 616  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
22066694 ggagttaagctcagataaactatgtcaactcaaagtgataaactatgtcaactcaaagtgctacttaaggactactgaaacctgataacctcggcctatg 22066793  T
617 ttttctcaacaaaaaatatacctcctagcaaaaagtggaaaaaagaggatataactagatcaattcaacactactactcttatatcaatat 707  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
22066794 ttttctcaacaaataatataccccctagcaaaaagtagaaaaaagaggacataactagatcaattcaacactactactcttatatcaatat 22066884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 17 - 551
Target Start/End: Original strand, 19022312 - 19022852
Alignment:
17 atgaaacacactgaacatattgcctaaagacatagaactcttagcaatattaatagccatacatccatgaatattttacatctatttttatttctattgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||| |||||||    
19022312 atgaaacacactgaacatattgcctaaagacatagaactcttagcaattctaatagccatacatcgatgaatattttacatctatttttattactattgt 19022411  T
117 ttgtttctgaacacagaagtagcacagacccaaaaaataaagcaaaatacagccaccgtaattacgcccattgatcaccccacaacctgctagacacaat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||     
19022412 ttgtttctgaacacagaagtagcacagacccaaaaaataaagcaaaatacagccaccgtaattacgcctattgatcaccccacaacctgctggacacaac 19022511  T
217 ccccatgcaacaaagaaaaaactgcactgcacatcaagtaaaaacgcagcctgcagacccacaaaaacccgcaaaacctccaacacaaccggcagcagcc 316  Q
    |||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
19022512 ccccacacaacaaagaaaaaattgcactgcacatcaagtaaaaacgcagcctgcagaccgacaaaaacccgcaaaacctccaacacaacaggcagcagcc 19022611  T
317 gtag-----cgcaacacaacacaacacctatcacagtcctctagtttgtgttccattcgaacg-aaaaaatgataagacaagaatctagttcacaaaaca 410  Q
    ||||     | |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||    
19022612 gtagcctaacacaacacaacacaacacctatcacagtcctctagtttgtgttccattcgaaagaaaaaaatgataagacaagaatctaattcacaaaaca 19022711  T
411 gaacctacctttggttccaagttgcaatgtactaagcttttctttttgacttgcttttgtctatgttagatcagataggtttatgaggtctatgttacct 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
19022712 gaacctacctttggttccaagttgcaatgtactaagcttttctttttgacttgcttttgtctatgttagatcagataggtttatgaggtctatggtacct 19022811  T
511 tgtaacggagttaagctcagataaactatgccaactcaaag 551  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
19022812 tgtaatggagttaagctcagataaactatgtcaactcaaag 19022852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 553 - 707
Target Start/End: Original strand, 19022831 - 19022985
Alignment:
553 gataaactatgtcaactcaaagtgctacttaaggactactgaaacatgataacctcggcctatgttttctcaacaaaaaatatacctcctagcaaaaagt 652  Q
    |||||||||||||||||||||| |||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
19022831 gataaactatgtcaactcaaagggctacttaaggagtattgaaacctgataacctcggcctatgttttctcaacaaaaaatataccccctagcaaaaagt 19022930  T
653 ggaaaaaagaggatataactagatcaattcaacactactactcttatatcaatat 707  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
19022931 ggaaaaaagaggacataactagatcaattcaacactactactcttatatcaatat 19022985  T

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Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 413
Target Start/End: Original strand, 4486882 - 4487283
Alignment:
17 atgaaacacactgaacatattgcctaaagacatagaactcttagcaatattaatagccatacatccatgaatattttacatctatttttatttctattgt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
4486882 atgaaacacactgaacatattgcctaaagacatagaactcttagtaatactaatagccatacatccatgagtattttacatctatttttatttctattgt 4486981  T
117 ttgtttctgaacacagaagtagcacagacccaaaaaataaagcaaaatacagccaccgtaattacgcccattgatcaccccacaacctgctagac----- 211  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||  ||||||||||| ||||||||||| |||||||||| |||         
4486982 ttgtttctgaacacagaactagcaaagacccaaaaaataaagcaaaatacagccattgtaattacgcctattgatcacccaacaacctgctggacctatg 4487081  T
212 acaatccccatgcaacaaagaaaaaactgcactgcacatcaagtaaaaacgcagcctgcagacccacaaaaacccgcaaaacctccaacacaaccggcag 311  Q
    |||  ||||| |||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||    
4487082 acagcccccacgcaacaaagaaaaaactgcacttcacatcaagtaaaaatgcagccagcagacccacaaaaacccgcaaaacctccaacacaacaggcag 4487181  T
312 cagccgtagcgcaacacaacacaacacctatcacagtcctctagtttgtgttccattcgaacgaaaaaatgataagacaagaatctagttcacaaaacag 411  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||    
4487182 cagccgtagcgcaacacaacacaacacctatcacagtcctatagtttgtgttccattcgaaagaaaaaatgataagacaagaatctaattcacaaaatag 4487281  T
412 aa 413  Q
    ||    
4487282 aa 4487283  T

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Target: chr7; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 600 - 707
Target Start/End: Original strand, 4487288 - 4487395
Alignment:
600 gataacctcggcctatgttttctcaacaaaaaatatacctcctagcaaaaagtggaaaaaagaggatataactagatcaattcaacactactactcttat 699  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
4487288 gataacctcggcctatgttttctcaacaaaaaatataccccctagcaaaaagtgtaaaaaagaggacataactagatcaattcaacactactactcttat 4487387  T
700 atcaatat 707  Q
    ||||||||    
4487388 atcaatat 4487395  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 400 - 467
Target Start/End: Complemental strand, 2269209 - 2269142
Alignment:
400 ttcacaaaacagaacctacctttggttccaagttgcaatgtactaagcttttctttttgacttgcttt 467  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||| |||||||||    
2269209 ttcacaaaacagaacctacctttggttccaatttgcaatgtattaagattttcttttttacttgcttt 2269142  T

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Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 10316539 - 10316883
Alignment:
17 atgaaacacactgaacatattgcctaaagacatagaactcttagcaatattaatagccatacatccatgaatattttacatctatttttatttctattgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
10316539 atgaaacacactgaacatattgcctaaagacatagaactcttagcaatactaatagccatacatccatgaatattttacatctatttttatttctattgt 10316638  T
117 ttgtttctgaacacagaagtagcacagacccaaaaaataaagcaaaatacagccaccgtaattacgcccattgatcaccccacaacctgctagac----- 211  Q
    |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||| |||         
10316639 ttgtttctgaacacagaagtagcatagacccaaaaaataaatcaaactacagccaccgtaattacgcctattgatcaccccacaacctgctggacctatg 10316738  T
212 acaatccccatgcaacaaagaaaaaactgcactgcacatcaagtaaaaacgcagcctgcagacccacaaaaacccgcaaaacctccaacacaaccggcag 311  Q
    |||  || || |||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||  |||||    
10316739 acagccctcacgcaacaaagaaaaaactgcattgcacatcaagtaaaaacacagcctacagacccacaaaaacccgcaaaacctccaacacaataggcag 10316838  T
312 cagccgtagcgcaacacaacacaacacctatcacagtcctctagt 356  Q
    || ||||||||||||| ||||||||||||||||||||||||||||    
10316839 caaccgtagcgcaacaaaacacaacacctatcacagtcctctagt 10316883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 177; Significance: 5e-95; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 471 - 707
Target Start/End: Original strand, 22619576 - 22619812
Alignment:
471 ctatgttagatcagataggtttatgaggtctatgttaccttgtaacggagttaagctcagataaactatgccaactcaaagtgataaactatgtcaactc 570  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| |||||||    
22619576 ctatgttaaatcagataggtttatgaggtctatggtaccttgtaacagagttaagctcagataaactttgtcaactcaaagtgataaactatctcaactc 22619675  T
571 aaagtgctacttaaggactactgaaacatgataacctcggcctatgttttctcaacaaaaaatatacctcctagcaaaaagtggaaaaaagaggatataa 670  Q
    ||||||||||||||||||| |||||||  |||||||||| | |||||||||||||||||||||||||| | | |||||||||||||||||||||| ||||    
22619676 aaagtgctacttaaggactgctgaaacccgataacctcgacttatgttttctcaacaaaaaatataccccttggcaaaaagtggaaaaaagaggacataa 22619775  T
671 ctagatcaattcaacactactactcttatatcaatat 707  Q
    |||||||||||||||||||||||||||||||||||||    
22619776 ctagatcaattcaacactactactcttatatcaatat 22619812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 30342535 - 30342482
Alignment:
74 catacatccatgaatattttacatctatttttatttctattgtttgtttctgaa 127  Q
    |||||||||||||||||||||| | |||||| ||||||| | |||||| |||||    
30342535 catacatccatgaatattttacctatattttgatttctactctttgttcctgaa 30342482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 153; Significance: 1e-80; HSPs: 2)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 168 - 463
Target Start/End: Complemental strand, 13759 - 13464
Alignment:
168 gccaccgtaattacgcccattgatcaccccacaacctgctagac-----acaatccccatgcaacaaagaaaaaactgcactgcacatcaagtaaaaacg 262  Q
    ||||||||||||| ||| ||||||||| |||||||||||| |||     |||  ||||| |||||| ||||||||| || |||||||||||| |||||||    
13759 gccaccgtaattatgcctattgatcactccacaacctgctggacctatgacagcccccacgcaacatagaaaaaaccgcgctgcacatcaaggaaaaacg 13660  T
263 cagcctgcagacccacaaaaacccgcaaaacctccaacacaaccggcagcagccgtagcgcaacacaacacaacacctatcacagtcctctagtttgtgt 362  Q
    ||||  |||||||||||||||||||| ||||||| |||||||| ||||||||||      ||||||||||||||||||| | ||||||||||||||||||    
13659 cagctagcagacccacaaaaacccgcgaaacctcaaacacaacaggcagcagcca-----caacacaacacaacacctaacgcagtcctctagtttgtgt 13565  T
363 tccattcgaacgaaaaaatgataagacaagaatctagttcacaaaacagaacctacctttggttccaagttgcaatgtactaagcttttctttttgactt 462  Q
    ||||||| || ||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||    
13564 tccattcaaaagaaaaaaagataagacaggaatctatttcacaaaacagaacctacctttggttccaagttgcaatatagtaagcttttcttttggactt 13465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 14201 - 14100
Alignment:
20 aaacacactgaacatattgcctaaagacatagaactcttagcaatattaatagccatacatccatgaatattttacatctatttttatttctattgtttg 119  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
14201 aaacatactgaacatattgcctaaagacatagaactcttagtaatactaatagccatacatccatgaatattttacctctatttttatttctattgtttg 14102  T
120 tt 121  Q
    ||    
14101 tt 14100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 343 - 467
Target Start/End: Original strand, 12287137 - 12287263
Alignment:
343 cacagtcctctagtttgtgttccattcgaacgaaaaaa--tgataagacaagaatctagttcacaaaacagaacctacctttggttccaagttgcaatgt 440  Q
    ||||||||| |||||||||||||||| ||| ||| |||  | | |||| | ||||||| ||||||||| ||||||||||||||||||||| |||||||||    
12287137 cacagtcctgtagtttgtgttccattagaaagaacaaagattaaaagataggaatctaattcacaaaagagaacctacctttggttccaatttgcaatgt 12287236  T
441 actaagcttttctttttgacttgcttt 467  Q
    | |||| |||| ||||||| |||||||    
12287237 attaagattttatttttgatttgcttt 12287263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 346 - 456
Target Start/End: Complemental strand, 32092045 - 32091933
Alignment:
346 agtcctctagtttgtgttccattcgaacgaaaaaa--tgataagacaagaatctagttcacaaaacagaacctacctttggttccaagttgcaatgtact 443  Q
    |||||| |||||||||||||||| ||| ||| |||  | | |||| | ||||||| ||||||||||| ||||||| ||||||||||| |||||||||| |    
32092045 agtcctatagtttgtgttccattagaaagaacaaagattaaaagataggaatctaattcacaaaacaaaacctacatttggttccaaattgcaatgtatt 32091946  T
444 aagcttttctttt 456  Q
    |||||||||||||    
32091945 aagcttttctttt 32091933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 343 - 468
Target Start/End: Original strand, 9391906 - 9392033
Alignment:
343 cacagtcctctagtttgtgttccattcgaacgaa--aaaatgataagacaagaatctagttcacaaaacagaacctacctttggttccaagttgcaatgt 440  Q
    ||||||| | |||||||||||||||| ||| |||  ||||| | || | | ||||||| |||||||||||||||||||||||||||| || |||||||||    
9391906 cacagtcttgtagtttgtgttccattagaaagaacaaaaattaaaaaataggaatctaattcacaaaacagaacctacctttggttcaaatttgcaatgt 9392005  T
441 actaagcttttctttttgacttgctttt 468  Q
    | || | |||||||||| |||| |||||    
9392006 attatgattttcttttttactttctttt 9392033  T

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