View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7460_high_6 (Length: 333)
Name: NF7460_high_6
Description: NF7460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7460_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 28978489 - 28978205
Alignment:
| Q |
13 |
atactacattggtgtcacaagaagctaccgtggtgaagattagtgacattttgaatgctattggaattattgtgctagctttcagaggtcacaatcttgt |
112 |
Q |
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| T |
28978489 |
atactacattggtgtcacaagaagttaccgtggtgaagattagtgacattttgaatgctattggaattattgtgctagctttcagaggtcacaatcttgt |
28978390 |
T |
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| Q |
113 |
gcttgaaattcaggtaggtaacatactcaaaatacattcctaattcatgaaagcaattgaaattgcnnnnnnnnnnnnnntcatctttgataccataata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
28978389 |
gcttgaaattcaggtaggtaacatactcaaaatacattcctaattcatgaaagcaattgaaattgcaaaaaattaaaaaatca---ttgataccataata |
28978293 |
T |
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| Q |
213 |
gcaattgcatatatgtgtagtgtgttgcgtttacgtatagactatttcattttaaagaacaatgtca-ttttaaaatgtgatatgata |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28978292 |
gcaattgcatatatgtgtagtgtgttgcgtttacgtatagactatttcattttaaagaacaatgtcatttttaaaatgtgatatgata |
28978205 |
T |
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