View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7460_low_12 (Length: 245)
Name: NF7460_low_12
Description: NF7460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7460_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 49064646 - 49064411
Alignment:
| Q |
1 |
tggtgttggcctttgggcgtatcaagaggaccaaaaataagtgatgcaatcacgcatgatnnnnnnnggagacagagccaaacattatggtttgtcatgt |
100 |
Q |
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| T |
49064646 |
tggttttggcctttgggcgtatcaagaggaccaaaaataagtgatgcaatcacgcatgataaaaaaaggagacagagccaaacattatggtttgtcatgt |
49064547 |
T |
|
| Q |
101 |
acatgaatgttaccaataccaaacaaacttcttatgtacttaaacgtctatcagcaaggacaccatgtccccattcgttgttgacgtttccctttgcatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49064546 |
acatgaatgttaccaataccaaacaaacttcttatttacttaaacgtctatcagcaaggacaccatgtccccattcgttgttgacgtttccctttgcatc |
49064447 |
T |
|
| Q |
201 |
ttatactacccttttcgttcaaatgaattctccctc |
236 |
Q |
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|||||||||| ||||| ||||||||||||||||||| |
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| T |
49064446 |
ttatactacctttttctttcaaatgaattctccctc |
49064411 |
T |
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