View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7460_low_4 (Length: 408)
Name: NF7460_low_4
Description: NF7460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7460_low_4 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 7979213 - 7979557
Alignment:
| Q |
1 |
tgagataacacaaagtgaactgaagcaaatatcatgatgaaataggtcaactttatctttttgcagcttggacacacaatatcatggaacttttgcaatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7979213 |
tgagataacacaaagtgaactgaagcaaatatcatgatgaaataggtcaactttatctttttgcagcttggacacacaatatcatggaacttttgcaatg |
7979312 |
T |
|
| Q |
101 |
atgttcccccagtgaccatataaacaatgttaacaccaatttctaccacaagttgttgaggcaccacaatataaagacctaattttttcccaaaagcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7979313 |
atgttcccccagtgaccatataaacaatgttaacaccaatttctaccacaagttgttgaggcaccacaatataaagacctaattttttcccaaaagcatg |
7979412 |
T |
|
| Q |
201 |
ttgacccaattcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccaaagtgtgtagaatgtgatgatccatgataga |
300 |
Q |
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|||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7979413 |
ttgacctaattcatggtatctatcaaagcgttttcccggaaccatttcatgcatctcaaccatttgccaaagtgtgtagaatgtgatgatccatgaaaga |
7979512 |
T |
|
| Q |
301 |
acaagtagggttatacctggacccctgcacaatacattatgattc |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7979513 |
acaagtagggttatacctggacccctgcacaatacattatgattc |
7979557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 25 - 327
Target Start/End: Complemental strand, 8032140 - 8031838
Alignment:
| Q |
25 |
gcaaatatcatgatgaaataggtcaactttatctttttgcagcttggacacacaatatcatggaacttttgcaatgatgttcccccagtgaccatataaa |
124 |
Q |
| |
|
||||| ||||| |||||||||||||| || || |||||||| |||| |||||| ||| |||||||| ||||||||| || || |||||||| || | |
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| T |
8032140 |
gcaaagatcataatgaaataggtcaatttgatatttttgcaacttgaacacactgtattgtggaacttccgcaatgatgcacctccggtgaccatgtaga |
8032041 |
T |
|
| Q |
125 |
caatgttaacaccaatttctaccacaagttgttgaggcaccacaatataaagacctaattttttcccaaaagcatgttgacccaattcatggtatctatc |
224 |
Q |
| |
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|||||| | |||| |||||| | |||||||||||| |||||||||||||| ||||| |||| ||||| ||||||||||| ||||||||||||||||| |
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| T |
8032040 |
caatgtcgcccccaacttctactataagttgttgaggaaccacaatataaaggcctaacttttcgccaaacgcatgttgacctaattcatggtatctatc |
8031941 |
T |
|
| Q |
225 |
aaaacgttttccaggaaccatttcatgcatctcaaccatttgccaaagtgtgtagaatgtgatgatccatgatagaacaagtagggttatacctggaccc |
324 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||||||||||||| | ||| || | |||||| ||||||||| | ||||| || | |||||||||| |
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| T |
8031940 |
aaaacgttttcccggaatcatttcatgcatctcaaccatttgccacaatgtatacagagtgatggtccatgataagagaagtatagtcaaacctggaccc |
8031841 |
T |
|
| Q |
325 |
ctg |
327 |
Q |
| |
|
||| |
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|
| T |
8031840 |
ctg |
8031838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 144 - 307
Target Start/End: Original strand, 7971788 - 7971951
Alignment:
| Q |
144 |
taccacaagttgttgaggcaccacaatataaagacctaattttttcccaaaagcatgttgacccaattcatggtatctatcaaaacgttttccaggaacc |
243 |
Q |
| |
|
|||||||||||||||||||| |||||| | | ||||| |||| |||||||||||||| || ||||||| ||| |||||| ||||||||| |||||| |
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| T |
7971788 |
taccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaacc |
7971887 |
T |
|
| Q |
244 |
atttcatgcatctcaaccatttgccaaagtgtgtagaatgtgatgatccatgatagaacaagta |
307 |
Q |
| |
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|| ||||||||||||||||||||||| | ||||| | ||||||||||||||| |||||||||| |
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| T |
7971888 |
atctcatgcatctcaaccatttgccacaaggtgtacagtgtgatgatccatgaaagaacaagta |
7971951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 144 - 307
Target Start/End: Complemental strand, 8041900 - 8041737
Alignment:
| Q |
144 |
taccacaagttgttgaggcaccacaatataaagacctaattttttcccaaaagcatgttgacccaattcatggtatctatcaaaacgttttccaggaacc |
243 |
Q |
| |
|
|||||||||||||||||||| |||||| | | ||||| |||| |||||||||||||| || ||||||| ||| |||||| ||||||||| |||||| |
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| T |
8041900 |
taccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaacc |
8041801 |
T |
|
| Q |
244 |
atttcatgcatctcaaccatttgccaaagtgtgtagaatgtgatgatccatgatagaacaagta |
307 |
Q |
| |
|
|| ||||||||||||||||||||||| | ||||| | ||||||||||||||| || ||||||| |
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| T |
8041800 |
atctcatgcatctcaaccatttgccacaaggtgtacagtgtgatgatccatgaaaggacaagta |
8041737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 394
Target Start/End: Original strand, 7979713 - 7979773
Alignment:
| Q |
334 |
acattatgattcaggatcatactaacttgtgcctttattatgcattgtccctgccaactga |
394 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
7979713 |
acattatatttcaggatcatgctaacttgtgcctttattatgcattatccctgccaactga |
7979773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 25 - 327
Target Start/End: Original strand, 3192 - 3494
Alignment:
| Q |
25 |
gcaaatatcatgatgaaataggtcaactttatctttttgcagcttggacacacaatatcatggaacttttgcaatgatgttcccccagtgaccatataaa |
124 |
Q |
| |
|
||||| ||||| |||||||| ||||| || || |||||||| ||||||||||| ||| ||||||||| ||| ||||| || || |||||||| |||| |
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|
| T |
3192 |
gcaaagatcataatgaaatatgtcaatttgatatttttgcaacttggacacactgtattgtggaactttcgcagtgatgcacctccggtgaccatgtaaa |
3291 |
T |
|
| Q |
125 |
caatgttaacaccaatttctaccacaagttgttgaggcaccacaatataaagacctaattttttcccaaaagcatgttgacccaattcatggtatctatc |
224 |
Q |
| |
|
||||||| || |||| |||||| ||||||||||||||||||||||||||||| ||||| |||| ||||| || ||||| |||| ||||||||| ||||| |
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|
| T |
3292 |
caatgttcaccccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtacctatc |
3391 |
T |
|
| Q |
225 |
aaaacgttttccaggaaccatttcatgcatctcaaccatttgccaaagtgtgtagaatgtgatgatccatgatagaacaagtagggttatacctggaccc |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||| || | |||||||||||||||| | ||||| || | |||||||||| |
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|
| T |
3392 |
aaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccatgataagataagtatagtcaaacctggaccc |
3491 |
T |
|
| Q |
325 |
ctg |
327 |
Q |
| |
|
||| |
|
|
| T |
3492 |
ctg |
3494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 14198610 - 14198905
Alignment:
| Q |
1 |
tgagataacacaaagtgaactgaagcaaatatcatgatgaaataggtcaactttatctttttgcagcttggacacacaatatcatggaacttttgcaatg |
100 |
Q |
| |
|
||||| || ||||||||||| || ||||| ||||| || ||||| ||||| || || |||||||| | |||||| ||||||| ||||| ||||| | |
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| T |
14198610 |
tgagacaagacaaagtgaacagaggcaaaaatcattataaaataagtcaatttgatttttttgcaatcggaacacacggtatcatgaaacttctgcaaag |
14198709 |
T |
|
| Q |
101 |
atgttcccccagtgaccatataaacaatgttaacaccaatttctaccacaagttgttgaggcaccacaatataaagacctaattttttcccaaaagcatg |
200 |
Q |
| |
|
|| |||| || || ||||| || ||||||||||| || | ||| || | ||||||||| ||||| |||||||| ||||| || |||| |||||||||| |
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|
| T |
14198710 |
attttcctccggttaccatgtagacaatgttaacgccgacttcaacaataagttgttgtggcacaacaatatacagacccaacttttcaccaaaagcata |
14198809 |
T |
|
| Q |
201 |
ttgacccaattcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccaaagtgtgtagaatgtgatgatccatga |
296 |
Q |
| |
|
|||||||| |||||| |||||||| |||||||| || || ||||||||||||||||||||||||||||| | ||||| |||||||||| |||||| |
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|
| T |
14198810 |
ttgacccagttcatgatatctatcgaaacgtttcccgggtaccatttcatgcatctcaaccatttgccataacgtgtataatgtgatgaaccatga |
14198905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 91 - 296
Target Start/End: Original strand, 41382134 - 41382339
Alignment:
| Q |
91 |
ttttgcaatgatgttcccccagtgaccatataaacaatgttaacaccaatttctaccacaagttgttgaggcaccacaatataaagacctaattttttcc |
190 |
Q |
| |
|
||||||||||||| || || |||||||| || ||||||| || |||| || |||||||||||||||||||| |||||| | | ||||| |||| | |
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|
| T |
41382134 |
ttttgcaatgatgcacctccggtgaccatgtagacaatgtccaccccaacttgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcac |
41382233 |
T |
|
| Q |
191 |
caaaagcatgttgacccaattcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccaaagtgtgtagaatgtgatgat |
290 |
Q |
| |
|
|||| |||||||| |||||||||| ||| |||||| ||||||||| |||||||| ||||||||||||||||||||||| || ||||||| |||||||| |
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| T |
41382234 |
caaacgcatgttggcccaattcattatatgtatcaagacgttttcccggaaccatctcatgcatctcaaccatttgccacagggtgtagagagtgatgat |
41382333 |
T |
|
| Q |
291 |
ccatga |
296 |
Q |
| |
|
|||||| |
|
|
| T |
41382334 |
ccatga |
41382339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 43853225 - 43853132
Alignment:
| Q |
205 |
cccaattcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccaaagtgtgtagaatgtgatgatccatgata |
298 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||| || ||||||| ||||| |||||||||| |
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|
| T |
43853225 |
cccaactcatggtacctatcaaaccgttttcctggaaccatttcatgcatttcaaccatttgccatagagtgtagagggtgattatccatgata |
43853132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 34409327 - 34409200
Alignment:
| Q |
169 |
atataaagacctaattttttcccaaaagcatgttgacccaattcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgcc |
268 |
Q |
| |
|
||||| ||||| |||||| ||||||||||||||||| | ||||| || || ||||| | | |||| || |||||||||||||| ||||||||||||| |
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| T |
34409327 |
atatatagacccaattttggtccaaaagcatgttgaccaagctcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgcc |
34409228 |
T |
|
| Q |
269 |
aaagtgtgtagaatgtgatgatccatga |
296 |
Q |
| |
|
| || ||| | |||||||| |||||||| |
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|
| T |
34409227 |
atagagtgaacaatgtgattatccatga |
34409200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 296
Target Start/End: Original strand, 38827385 - 38827480
Alignment:
| Q |
201 |
ttgacccaattcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccaaagtgtgtagaatgtgatgatccatga |
296 |
Q |
| |
|
||||||||| ||||| || ||||| || | ||||| ||||| |||||||||||||||||||||||||| | |||||||| || |||| |||||| |
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|
| T |
38827385 |
ttgacccaactcatgatacctatccaatctctttccgggaactatttcatgcatctcaaccatttgccatatagtgtagaaggtaatgacccatga |
38827480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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