View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7460_low_5 (Length: 399)
Name: NF7460_low_5
Description: NF7460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7460_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 30 - 383
Target Start/End: Complemental strand, 26097614 - 26097264
Alignment:
| Q |
30 |
aaatcttcaaaacaccataacccaaaaatcagttcttataggatgcatcttagctttcttttttcccaatggcttctttgttgcttaatgannnnnnnnn |
129 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
26097614 |
aaatcttcaaaacaccataaccccaaaatcag--cttataggatgcatcttagctttctttttttccaatggcttctttgtttcttaatgattttttata |
26097517 |
T |
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| Q |
130 |
nnnnnnnncttctggcaggaaaattcagctgaatgtgaatcatcagatagagttaacatgttaaaatcagaatttgtggcactgttatcagataaaaatg |
229 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26097516 |
ttttttt-cttttggcaggaaaattcagctgaatgtgaatcatcagatagagttaacatgttaaaatcagaatttgtggcactgttatcagataaaaatg |
26097418 |
T |
|
| Q |
230 |
cagagctgaaaaaacagttgagggagatgacggaaaggcttcggcttgcagagcaagggaaagaccatattgcatcagttaaagaggaaaaagctggacc |
329 |
Q |
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| T |
26097417 |
cagagctgaaaaaacagttgagggagatgacggaaaggcttcggcttgcagagcaagggaaagaccatattgcatcagttaaagaggaaaaagctggacc |
26097318 |
T |
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| Q |
330 |
ttttggtactgtcaaggcaataagaaccaatcctaatgttgctcctgatgaatc |
383 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26097317 |
ttttggtactgtcaaggcaataagaaccagtcctaatgttgctcctgatgaatc |
26097264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 228 - 383
Target Start/End: Complemental strand, 26127363 - 26127208
Alignment:
| Q |
228 |
tgcagagctgaaaaaacagttgagggagatgacggaaaggcttcggcttgcagagcaagggaaagaccatattgcatcagttaaagaggaaaaagctgga |
327 |
Q |
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||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26127363 |
tgcagagctaaaaaaacagttgagggagttgagggaaaggcttcggcttgcagagcaagggaaagaccatattgcatcagttaaagaggaaaaagctgga |
26127264 |
T |
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| Q |
328 |
ccttttggtactgtcaaggcaataagaaccaatcctaatgttgctcctgatgaatc |
383 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26127263 |
ccttttggtactgtcaaggcattaagaaccaatcctaatgttgctcctgatgaatc |
26127208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 60 - 383
Target Start/End: Complemental strand, 26065602 - 26065264
Alignment:
| Q |
60 |
agttcttataggatgcatcttagctttcttttttcccaatggcttctttgttgcttaatgannnnnnnnnnnnnnnnncttctggcaggaaaattcagct |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| || || ||| |||||||||| |||||| |
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| T |
26065602 |
agttcttataggatgcatcttagctttcttttttcccaatgacttctttgtttctcaaatgattttttattttattttcttttggcaggaaagttcagca |
26065503 |
T |
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| Q |
160 |
gaatgtgaatcatcagatagagttaacatgttaaaatcagaatttgtggcactgttatcagataaaaatgcagagctgaaaaaacagttgagggagatga |
259 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| ||| ||| |
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| T |
26065502 |
gaatctgaatcatcagataaagttaacatgttaaaatcagaatttgtggcgctcttatcagataaaaatgcagagctgaaaaaacaagtgagtgagttga |
26065403 |
T |
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| Q |
260 |
cggaaaggcttcggcttgcagagcaagggaaagacca---------------tattgcatcagttaaagaggaaaaagctggaccttttggtactgtcaa |
344 |
Q |
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|||||||||||| ||||||||||||||| |||||||| |||||| || |||| ||||||||||||||||||||||||||||||| |
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| T |
26065402 |
cggaaaggcttcagcttgcagagcaaggaaaagaccaggcagaaaaaatgttgcttgcattaggtaaacaggaaaaagctggaccttttggtactgtcaa |
26065303 |
T |
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| Q |
345 |
ggcaataagaaccaatcctaatgttgctcctgatgaatc |
383 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
26065302 |
ggcattaagaaccaatcctaatgttgctcctgatgaatc |
26065264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 142 - 383
Target Start/End: Complemental strand, 26036869 - 26036616
Alignment:
| Q |
142 |
tggcaggaaaattcagctgaatgtgaatcatcagatagagttaacatgttaaaatcagaatttgtggcactgttatcagataaaaatgcagagctgaaaa |
241 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| | |||||| ||||| || |||||||||| |
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| T |
26036869 |
tggcaggaaaactcagctgaatgtgaatcatcagatagagtcaacatgttgaaatcagagtttgtggcagt---atcagacaaaaacgctgagctgaaaa |
26036773 |
T |
|
| Q |
242 |
aacagttgagggagatgacggaaaggcttcggcttgcagagcaagggaaagacca---------------tattgcatcagttaaagaggaaaaagctgg |
326 |
Q |
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||||| |||||||| |||| ||||||||||||||||||||||||||||||||||| | |||||| || |||| | ||||||||||| |
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| T |
26036772 |
aacaggtgagggagttgacagaaaggcttcggcttgcagagcaagggaaagaccaggctcaaaaacaatttcttgcattaggtaaacaagaaaaagctgg |
26036673 |
T |
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| Q |
327 |
accttttggtactgtcaaggcaataagaaccaatcctaatgttgctcctgatgaatc |
383 |
Q |
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|||||||||||||||||||| | ||||||||||||||| ||||| |||||||||||| |
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| T |
26036672 |
accttttggtactgtcaagggattaagaaccaatcctactgttgttcctgatgaatc |
26036616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 204 - 383
Target Start/End: Complemental strand, 26120745 - 26120551
Alignment:
| Q |
204 |
tgtggcactgttatcagataaaaatgcagagctgaaaaaacagttgagggagatgacggaaaggcttcggcttgcagagcaagggaaagacca------- |
296 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
26120745 |
tgtggcacttttatcagataaaaatgcagagctaaaaaaacagttgagggagttgacggaaaggcttcggattgcagagcaagggaaagaccagacagaa |
26120646 |
T |
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| Q |
297 |
--------tattgcatcagttaaagaggaaaaagctggaccttttggtactgtcaaggcaataagaaccaatcctaatgttgctcctgatgaatc |
383 |
Q |
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| T |
26120645 |
aaagagtttcttgcattagttaaacaggaaaaagctggaccttttggtactgtcaaggcattaagaaccaatcctattgttgctcctgatgaatc |
26120551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 142 - 264
Target Start/End: Complemental strand, 26085224 - 26085102
Alignment:
| Q |
142 |
tggcaggaaaattcagctgaatgtgaatcatcagatagagttaacatgttaaaatcagaatttgtggcactgttatcagataaaaatgcagagctgaaaa |
241 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26085224 |
tggcaggaaaattcagctgaatctgaatcatcagatagagttaacatgttaaaatcagaatttgtggcactcttatcagataaaaatgcagagctgaaaa |
26085125 |
T |
|
| Q |
242 |
aacagttgagggagatgacggaa |
264 |
Q |
| |
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||||| |||||||| |||||||| |
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| T |
26085124 |
aacaggtgagggagttgacggaa |
26085102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 26085063 - 26084990
Alignment:
| Q |
309 |
taaagaggaaaaagctggaccttttggtactgtcaaggcaataagaaccaatcctaatgttgctcctgatgaat |
382 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
26085063 |
taaacaggaaaaagctggaccttttggtactgtcaaggcattaagaaccaatcctactgttgctcctgatgaat |
26084990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 26038356 - 26038306
Alignment:
| Q |
61 |
gttcttataggatgcatcttagctttcttttttcccaatggcttctttgtt |
111 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26038356 |
gttcttattggatgcatcttagctttcttttttcctaatggcttctttgtt |
26038306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 26111836 - 26111785
Alignment:
| Q |
60 |
agttcttataggatgcatcttagctttcttttttcccaatggcttctttgtt |
111 |
Q |
| |
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||||||||| ||||||||| ||| |||||||||||| |||| |||||||||| |
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| T |
26111836 |
agttcttattggatgcatcatagttttcttttttcctaatgacttctttgtt |
26111785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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