View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7460_low_7 (Length: 327)
Name: NF7460_low_7
Description: NF7460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7460_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 153 - 316
Target Start/End: Original strand, 4928684 - 4928847
Alignment:
| Q |
153 |
ttgggacaggctacttgttctctataaataaatattattgtaataaacctacataatggatacagatgaggatggtccctttggtactattggaaatcat |
252 |
Q |
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| T |
4928684 |
ttgggacaggctacttgttctctataaataaatattattgtaataaacctacataatggatacagatgaggatggtccctttagtactattggaaatcat |
4928783 |
T |
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| Q |
253 |
gtgacaactaccaccctttttcttaattccaccacccttccaatctgctctcatttctgtctct |
316 |
Q |
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| T |
4928784 |
gtgacaactaccaccctttttctcaattccaccacccttcctatctgctttcatttctgtctct |
4928847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 4928552 - 4928641
Alignment:
| Q |
20 |
tacttttggtatataattcattcagcagcagagtcaagagtcatcaatttcaataagtatatagtagatagactattttagtttctaagg |
109 |
Q |
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| T |
4928552 |
tacttttggtatataattcattcagcagcagagtcaagagtcatcaatttcaataagtatatagtagatagactattttagtttctaagg |
4928641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 219
Target Start/End: Complemental strand, 35846404 - 35846374
Alignment:
| Q |
189 |
attgtaataaacctacataatggatacagat |
219 |
Q |
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| T |
35846404 |
attgtaataaacctacataatggatacagat |
35846374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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