View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7460_low_9 (Length: 299)
Name: NF7460_low_9
Description: NF7460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7460_low_9 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 4390150 - 4389873
Alignment:
| Q |
1 |
agtatattgaacttgttggtgaatagtttgaatgggacgttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaaga |
100 |
Q |
| |
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||||||||||||||||| ||||||||| ||||||||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
4390150 |
agtatattgaacttgttagtgaatagtgtgaatgggatgttctttttgaagtcggttgatgcgtccgatatgttggaatcgtctgagaaattgtttaaga |
4390051 |
T |
|
| Q |
101 |
tgatggatgatgttgttgaagaggttggtgaagaaaatgttcttcaagttgtgacggataatacggcttatttcagagctgctggtgagatgttgatgga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4390050 |
tgatggatgatgttgttgaagaggttggtgaagaaaatgttgttcaagttgtgacggataatacggcatatttcagagctgctggtgagatgttgatgga |
4389951 |
T |
|
| Q |
201 |
gaagaggactaggttgtattggacaccttgtgcgacacactgcattgagatgatgttggaagattacgagaagaaaatac |
280 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4389950 |
gaagaggactaggttgtattggacaccttgt--gacacactgcattgagatgatgttggaagattacgagaagaaaatac |
4389873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 4385040 - 4384761
Alignment:
| Q |
1 |
agtatattgaacttgttggtgaatagtttgaatgggacgttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaaga |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4385040 |
agtatattgaacttgttggtgaatagtgtgaatgggacgttctttttaaagtcggttgatgcgtcagatatgttggaatcgtctgagaaattgtttaaga |
4384941 |
T |
|
| Q |
101 |
tgatggatgatgttgttgaagaggttggtgaagaaaatgttcttcaagttgtgacggataatacggcttatttcagagctgctggtgagatgttgatgga |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4384940 |
tgatggatgatgttgttgaagaggttggggaagaaaatgttgttcaagttgtcacggataatacggcttatttcaaagctgctggtgagatgttgatgga |
4384841 |
T |
|
| Q |
201 |
gaagaggactaggttgtattggacaccttgtgcgacacactgcattgagatgatgttggaagattacgagaagaaaatac |
280 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| |
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| T |
4384840 |
gaagaggactaggttgtattggacaccttgtgcgacacactgcattgagaggatgttggaagattatgagaagaagatac |
4384761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 4377467 - 4377196
Alignment:
| Q |
1 |
agtatattgaacttgttggtgaatagtttgaatgggacgttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaaga |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4377467 |
agtatattgaatttgttggtgaatagtttgaatgggacattctttttgaagtcggttgatgcgtcagatatgatggaatcgcctgagaaattgtttaaga |
4377368 |
T |
|
| Q |
101 |
tgatggatgatgttgttgaagaggttggtgaagaaaatgttcttcaagttgtgacggataatacggcttatttcagagctgctggtgagatgttgatgga |
200 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
4377367 |
tgatggatgatgttgttgaagaggttggggaagaaaatgttgttcaagttgtaacggataatacgacttatttcaaagctgctggtgagatgttgatgga |
4377268 |
T |
|
| Q |
201 |
gaagaggactaggttgtattggacaccttgtgcgacacactgcattgagatgatgttggaagattacgagaa |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4377267 |
gaagaggactaggttgtattggacaccttgtgcgacacactgcattgagatgatgttggaagattatgagaa |
4377196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 40 - 274
Target Start/End: Original strand, 4414444 - 4414677
Alignment:
| Q |
40 |
ttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatg |
139 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||| ||| | ||| | ||||||||||||||||| |||| ||||||||||| |||||||||| |
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|
| T |
4414444 |
ttctttttgaagtccgttgatgcgtcgaatatgttggaatcacctaacaaactctttaagatgatggatgaaattgtagaagaggttgg-gaagaaaatg |
4414542 |
T |
|
| Q |
140 |
ttcttcaagttgtgacggataatacggcttatttcagagctgctggtgagatgttgatggagaagaggactaggttgtattggacaccttgtgcgacaca |
239 |
Q |
| |
|
|| | ||| ||||||| || ||||| | || | || || |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| ||||| |
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| T |
4414543 |
ttgtccaaattgtgacagacaatacaacctactacaaagttgctggtgagatgtagatggtgaaaaggactaggttgtattggacaccttgtgcaacaca |
4414642 |
T |
|
| Q |
240 |
ctgcattgagatgatgttggaagattacgagaaga |
274 |
Q |
| |
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| ||||||||||| |||||||| || ||||||| |
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| T |
4414643 |
cacaattgagatgatattggaagactatgagaaga |
4414677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 247
Target Start/End: Complemental strand, 4360476 - 4360269
Alignment:
| Q |
40 |
ttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatg |
139 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||||||||||| |||||||| | ||||| ||||||||||| ||||||||||||||||| |||||||||| |
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| T |
4360476 |
ttctttttgaagactattgatgcgtctgatatgttggaatcgtctgagaaactctttaaaatgatggatgacgttgttgaagaggttggggaagaaaatg |
4360377 |
T |
|
| Q |
140 |
ttcttcaagttgtgacggataatacggcttatttcagagctgctggtgagatgttgatggagaagaggactaggttgtattggacaccttgtgcgacaca |
239 |
Q |
| |
|
|| | || ||||| ||||| |||| | || | |||||| | || ||||||||||| ||| ||||||||| |||||||||||||||| || ||||| |
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| T |
4360376 |
ttgtccacgttgtaacggaatatacaccatactatgtagctgccgctgggatgttgatggcgaaaaggactaggctgtattggacaccttgcgcaacaca |
4360277 |
T |
|
| Q |
240 |
ctgcattg |
247 |
Q |
| |
|
||||||| |
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|
| T |
4360276 |
ttgcattg |
4360269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 4365872 - 4365773
Alignment:
| Q |
40 |
ttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatg |
139 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
4365872 |
ttctttttgaagtctattgatgcgtctgatatgttggaatcgcctgagaaactctttaagatgatggatgacgttgttgaagaggttggggaagaaaatg |
4365773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 40 - 259
Target Start/End: Complemental strand, 4370272 - 4370053
Alignment:
| Q |
40 |
ttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatg |
139 |
Q |
| |
|
|||||||||||||| |||||||| | |||||||||||||||||||| ||| | ||| ||| |||| | |||||||||||||||| |||||||||| |
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|
| T |
4370272 |
ttctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaactctttcggattttggacaacattgttgaagaggttggagaagaaaatg |
4370173 |
T |
|
| Q |
140 |
ttcttcaagttgtgacggataatacggcttatttcagagctgctggtgagatgttgatggagaagaggactaggttgtattggacaccttgtgcgacaca |
239 |
Q |
| |
|
|| | ||| |||||||||| ||||| | | | |||||||| ||||||||||||||||||||| || |||||| |||||||||| |||||||| ||| | |
|
|
| T |
4370172 |
ttgtccaaattgtgacggacaatacaccattctgcagagctgttggtgagatgttgatggagaaaagaactaggctgtattggaccccttgtgcaacaaa |
4370073 |
T |
|
| Q |
240 |
ctgcattgagatgatgttgg |
259 |
Q |
| |
|
|||||| ||||||| |||| |
|
|
| T |
4370072 |
ttgcattcagatgattttgg |
4370053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 94 - 254
Target Start/End: Original strand, 5725483 - 5725643
Alignment:
| Q |
94 |
tttaagatgatggatgatgttgttgaagaggttggtgaagaaaatgttcttcaagttgtgacggataatacggcttatttcagagctgctggtgagatgt |
193 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||| |||||||||||| | ||| |||||||||| | | | | || | | ||||||||||||| |
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|
| T |
5725483 |
tttaagatgatggatgacattgttgaagaagttggggaagaaaatgttgtccaaattgtgacggacagtgcaacatactatgaaaaggctggtgagatgt |
5725582 |
T |
|
| Q |
194 |
tgatggagaagaggactaggttgtattggacaccttgtgcgacacactgcattgagatgat |
254 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
5725583 |
tgatgaagaaaaggactaggttgtattggacaccttgtgcaacacggtgcattgagatgat |
5725643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 275
Target Start/End: Original strand, 15658701 - 15658882
Alignment:
| Q |
94 |
tttaagatgatggatgatgttgttgaagaggttggtgaagaaaatgttcttcaagttgtgacggataatacggcttatttcagagctgctggtgagatgt |
193 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| |||||||||||| | || || || ||||| ||| | || ||| | || ||||||||| ||| |
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| T |
15658701 |
tttaagatgattgatgatgttgttgaagagattggagaagaaaatgttgtccaggtagttacggacaatgcagcaaattataaggcagctggtgagttgt |
15658800 |
T |
|
| Q |
194 |
tgatggagaagaggactaggttgtattggacaccttgtgcgacacactgcattgagatgatgttggaagattacgagaagaa |
275 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||| | || || ||||| |||||||||| |||| |||||||| |
|
|
| T |
15658801 |
tgatggagaagaggccacatttgtattggacaccatgtgctgctcattgtattgacttgatgttggaggattttgagaagaa |
15658882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 245861 - 245814
Alignment:
| Q |
94 |
tttaagatgatggatgatgttgttgaagaggttggtgaagaaaatgtt |
141 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| |||||||||||| |
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| T |
245861 |
tttaagatgattgatgatgttgttgaagagattggagaagaaaatgtt |
245814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 244638 - 244685
Alignment:
| Q |
94 |
tttaagatgatggatgatgttgttgaagaggttggtgaagaaaatgtt |
141 |
Q |
| |
|
||||||||||| ||||||||||||||| || |||| |||||||||||| |
|
|
| T |
244638 |
tttaagatgattgatgatgttgttgaaaagattggagaagaaaatgtt |
244685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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