View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_1D_high_3 (Length: 409)
Name: NF7461_1D_high_3
Description: NF7461_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_1D_high_3 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 88 - 409
Target Start/End: Original strand, 11918189 - 11918509
Alignment:
| Q |
88 |
catcatttttatttaagtttattcttctatttatttttctctaccaaactaattcaacattagttctctaagttctcaaaattaaaaaagtttataattt |
187 |
Q |
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| T |
11918189 |
catcatttttatttaagtttattcttctatttgtttttctctaccaaacta-ttcaacattagttctgtaagttctctaaattaaaaaagtttataattt |
11918287 |
T |
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| Q |
188 |
gacttttaacctttttctaatcgagcattagtttatgaataatttgttatttaattcttcaaccagaaaaattcaaccggattcgtaaacttttagaaca |
287 |
Q |
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| T |
11918288 |
gacttttaacctttttctaatcgagcattagtttatgaataatttgttatttaattcttcaaccagaaaaattcaaccggattcgtaaacttttagaaca |
11918387 |
T |
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| Q |
288 |
tttttaattaatttccttgtaaacttttaaatactcaattctgaatacttcccaagtgatatcagtatctacagcttccaacctctgacgagtgttctct |
387 |
Q |
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| T |
11918388 |
tttttaattaatttccttgtaaacttttaaatactcaattctgaatacttcccaagtgatatcagtatctacagcttccaacctctgacgagtgttctct |
11918487 |
T |
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| Q |
388 |
cgccaatattcagcttctttag |
409 |
Q |
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| T |
11918488 |
cgccaatattcagcttctttag |
11918509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 88 - 331
Target Start/End: Complemental strand, 11909761 - 11909519
Alignment:
| Q |
88 |
catcatttttatttaagtttattcttctatttatttttctctaccaaactaattcaacattagttctctaagttctcaaaattaaaaaagtttataattt |
187 |
Q |
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| T |
11909761 |
catcatttttatttaagtttattcttctatttgtttttctctaccaaacta-ttcaacattagttctttaagttctctaaattaaaaaagtttataattt |
11909663 |
T |
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| Q |
188 |
gacttttaacctttttctaatcgagcattagtttatgaataatttgttatttaattcttcaaccagaaaaattcaaccggattcgtaaacttttagaaca |
287 |
Q |
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| T |
11909662 |
gacttttaatctttttctaatcgagcattagtttatgaataatttgttatttaatttttcaactagaaaaattcaaccggattcgtaaacttttagaaca |
11909563 |
T |
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| Q |
288 |
tttttaattaatttccttgtaaacttttaaatactcaattctga |
331 |
Q |
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| T |
11909562 |
tttttaattaatttccttgtaaacttttaaatactcaattctga |
11909519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 324 - 409
Target Start/End: Complemental strand, 11909409 - 11909324
Alignment:
| Q |
324 |
aattctgaatacttcccaagtgatatcagtatctacagcttccaacctctgacgagtgttctctcgccaatattcagcttctttag |
409 |
Q |
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| T |
11909409 |
aattctgaatacttcccaagtgatctcagtacctacaacttccaacctctgacgagtgttctctcgccaatattcagcttctttag |
11909324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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