View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7461_1D_high_5 (Length: 355)

Name: NF7461_1D_high_5
Description: NF7461_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7461_1D_high_5
NF7461_1D_high_5
[»] chr6 (2 HSPs)
chr6 (15-347)||(13328785-13329109)
chr6 (274-347)||(1217504-1217581)
[»] chr1 (4 HSPs)
chr1 (222-347)||(25713117-25713242)
chr1 (255-347)||(52964412-52964503)
chr1 (252-347)||(52961307-52961401)
chr1 (253-347)||(18416188-18416280)
[»] chr2 (3 HSPs)
chr2 (216-346)||(30701252-30701382)
chr2 (278-346)||(30701394-30701462)
chr2 (267-347)||(30701463-30701543)
[»] chr8 (2 HSPs)
chr8 (255-347)||(37001067-37001158)
chr8 (275-347)||(36996987-36997056)
[»] chr7 (1 HSPs)
chr7 (252-347)||(37625139-37625233)
[»] chr4 (3 HSPs)
chr4 (253-347)||(33831143-33831235)
chr4 (253-347)||(37920552-37920644)
chr4 (253-347)||(33835078-33835170)
[»] chr5 (2 HSPs)
chr5 (253-347)||(8081382-8081475)
chr5 (271-347)||(30589118-30589194)


Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 13328785 - 13329109
Alignment:
Q  15 gcagtggcgttttaggtgttgataggtcgacgacctttggtgcttatggtagggcgcgtgtttaaaatagacccacatgaaacttcgccggcgacggcgg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |  |||||||||||||||||||         
T  13328785 gcagtggcgttttaggtgttgataggtcgacgacctttggtgcttatggtagggcgcgtgtttaatataaactctgatgaaacttcgccggcgac----- 13328879  T
Q  115 tgcagtcactatttcaaagtagacaacaaacaagcataaacttctagggttagccttgacgacggccaaccctaaaaacctggatccagaacctgcactg 214  Q
       | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13328880 ---aataactatttcaaagtagacaacaaacaagcataaacttctagggttagccttgacgacggccaaccctaaaaacctggatccagaacctgcactg 13328976  T
Q  215 gtaccaacttgaataatttaaattgaataattcattcattacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataagga 314  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13328977 gtaccaacttgaataatttaaattgaataactcattcattacaatgacgtatgcacacttatatacacgagagaatctctcaagaaaacataaataagga 13329076  T
Q  315 aactaaatcaagcataataagtagagaataatc 347  Q
    |||||||||||||||||||||||||||||||||    
T  13329077 aactaaatcaagcataataagtagagaataatc 13329109  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 1217504 - 1217581
Alignment:
Q  274 tatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagc-----ataataagtagagaataatc 347  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||    
T  1217504 tatatacac-agagaatctctcaagaaaacataaataaggaaactaaatcaagcacagtataataagtagagaataatc 1217581  T

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Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 222 - 347
Target Start/End: Complemental strand, 25713242 - 25713117
Alignment:
Q  222 cttgaataatttaaattgaataattcattcattacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaa 321  Q
    ||||||||||||| ||||||||| ||    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25713242 cttgaataatttagattgaataactctaatattacaatgatgtatgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaag 25713143  T
Q  322 tcaagcataataagtagagaataatc 347  Q
    ||||||||||||||||||||||||||    
T  25713142 tcaagcataataagtagagaataatc 25713117  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 255 - 347
Target Start/End: Complemental strand, 52964503 - 52964412
Alignment:
Q  255 acaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 347  Q
    |||||||||||  ||  |||||||||| ||||||||||||||| ||| || ||||||| |||||||||||| |||||||| ||||||||||||    
T  52964503 acaatgatgtatacaagcttatatacaagagagaatctctcaataaagca-aaataagaaaactaaatcaaccataataaatagagaataatc 52964412  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 347
Target Start/End: Complemental strand, 52961401 - 52961307
Alignment:
Q  252 attacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 347  Q
    ||||||||||||||  || |||||| |||| |||| |||||||||| ||| || ||||||| |||||||||||| |||||||| || |||||||||    
T  52961401 attacaatgatgtatacaaacttatgtacaagagaaaatctctcaataaagca-aaataagcaaactaaatcaaccataataaataaagaataatc 52961307  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 18416188 - 18416280
Alignment:
Q  253 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 347  Q
    ||||||||||||| |||   ||||||||| |||||||| ||||| |||| || |||  | |||||||||||||  ||||||| ||||||||||||    
T  18416188 ttacaatgatgtatgcaagtttatatacaagagagaatatctcatgaaagcaaaaa--acgaaactaaatcaactataataaatagagaataatc 18416280  T

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Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 216 - 346
Target Start/End: Original strand, 30701252 - 30701382
Alignment:
Q  216 taccaacttgaataatttaaattgaataattcattcattacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaa 315  Q
    ||||||||||||||||||| ||||||||| |  |  |||||||| ||||  |||| |||| |||||| |||||||||||||||||| |||||||||| ||    
T  30701252 taccaacttgaataatttagattgaataacttgtatattacaataatgtgtgcactcttacatacacaagagaatctctcaagaaagcataaataagaaa 30701351  T
Q  316 actaaatcaagcataataagtagagaataat 346  Q
    ||||||||||||||||||| |||||||||||    
T  30701352 actaaatcaagcataataattagagaataat 30701382  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 30701394 - 30701462
Alignment:
Q  278 tacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataat 346  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  30701394 tacacaagataatctctcaagaaagcataaataaggaaactaaatcaagcataataattagagaataat 30701462  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 30701463 - 30701543
Alignment:
Q  267 gcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 347  Q
    |||| |||| |||||| ||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||    
T  30701463 gcactcttacatacacaagataatctctcaagaaagcataaataaagaaactaaatcaagcataataattagagaataatc 30701543  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 347
Target Start/End: Complemental strand, 37001158 - 37001067
Alignment:
Q  255 acaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 347  Q
    ||||||||||| |||  |||||||||| |||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||||||||||||    
T  37001158 acaatgatgtatgcaagcttatatacaagagagaatctctcatgaaaaca-aaataaggaaactaaatcaaccataataaatagagaataatc 37001067  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 36997056 - 36996987
Alignment:
Q  275 atatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 347  Q
    |||||||||||||||||||  | ||||||| |||||||||||||||||||| |||||||| ||||||||||||    
T  36997056 atatacacgagagaatctc--atgaaaaca-aaataaggaaactaaatcaaccataataaatagagaataatc 36996987  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 252 - 347
Target Start/End: Complemental strand, 37625233 - 37625139
Alignment:
Q  252 attacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 347  Q
    |||||||||||| |  || |||||||||||||||||||| |||||| |||||| |||||| ||||||||||||| ||| |||| ||||||||||||    
T  37625233 attacaatgatgcatacaaacttatatacacgagagaatatctcaataaaaca-aaataatgaaactaaatcaaccatgataaatagagaataatc 37625139  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 253 - 347
Target Start/End: Complemental strand, 33831235 - 33831143
Alignment:
Q  253 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 347  Q
    ||||||||||||| |||  |||||||||| |||||||| |||||||||| |  ||| ||||||||||||||||  ||||||| ||||||||||||    
T  33831235 ttacaatgatgtatgcaagcttatatacaagagagaatatctcaagaaagc--aaaaaaggaaactaaatcaactataataaatagagaataatc 33831143  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 37920552 - 37920644
Alignment:
Q  253 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 347  Q
    ||||||||||||| |||  |||||||||| |||||||| ||||| |||| || |||  |||||||||||||||  ||||||| ||||||||||||    
T  37920552 ttacaatgatgtatgcaagcttatatacaagagagaatatctcaggaaagcaaaaa--aggaaactaaatcaactataataaatagagaataatc 37920644  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 347
Target Start/End: Complemental strand, 33835170 - 33835078
Alignment:
Q  253 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 347  Q
    ||||||||||||| |||  |||||||||| |||||||| ||||| |||| |  ||| ||||||||||||||||  ||||||| || |||||||||    
T  33835170 ttacaatgatgtatgcaagcttatatacaagagagaatatctcaggaaagc--aaaaaaggaaactaaatcaactataataaataaagaataatc 33835078  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 8081382 - 8081475
Alignment:
Q  253 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagt-agagaataatc 347  Q
    ||||||||||||| |||  |||||||||| |||||||| ||||| |||| |  ||| ||||||||||||||||  ||||||| | |||||||||||    
T  8081382 ttacaatgatgtatgcaagcttatatacaagagagaatatctcaggaaagc--aaaaaaggaaactaaatcaactataataaataagagaataatc 8081475  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 347
Target Start/End: Original strand, 30589118 - 30589194
Alignment:
Q  271 acttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 347  Q
    ||||||||||| || |||||||||||||||||   ||| || |||| |||||||| |||| ||| ||||||||||||    
T  30589118 acttatatacaagaaagaatctctcaagaaaaagaaaacaatgaaattaaatcaatcatagtaaatagagaataatc 30589194  T

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