View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7461_1D_low_1 (Length: 558)

Name: NF7461_1D_low_1
Description: NF7461_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7461_1D_low_1
NF7461_1D_low_1
[»] chr8 (4 HSPs)
chr8 (79-550)||(41733818-41734293)
chr8 (24-80)||(41734937-41734993)
chr8 (217-258)||(3681628-3681669)
chr8 (217-257)||(45261444-45261484)
[»] chr5 (3 HSPs)
chr5 (217-259)||(28581186-28581228)
chr5 (219-257)||(2263711-2263749)
chr5 (218-259)||(27651552-27651593)
[»] chr6 (2 HSPs)
chr6 (218-262)||(9408334-9408378)
chr6 (217-257)||(11713666-11713706)
[»] chr7 (1 HSPs)
chr7 (210-257)||(22062427-22062474)
[»] chr4 (4 HSPs)
chr4 (217-252)||(22050244-22050279)
chr4 (218-259)||(41897575-41897616)
chr4 (218-251)||(53807430-53807463)
chr4 (217-257)||(17872090-17872130)
[»] chr3 (2 HSPs)
chr3 (218-261)||(51772888-51772931)
chr3 (218-259)||(552172-552213)
[»] chr2 (1 HSPs)
chr2 (218-255)||(7772482-7772519)
[»] scaffold0999 (1 HSPs)
scaffold0999 (217-257)||(2178-2218)
[»] chr1 (1 HSPs)
chr1 (218-258)||(43843890-43843930)


Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 79 - 550
Target Start/End: Complemental strand, 41734293 - 41733818
Alignment:
Q  79 aaattatgtttgcaactatccgnnnnnnnnatcattaggtgaattttttggtcgaatttagtctagctataaacaatttacctttttaaaacaaataagt 178  Q
    ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  41734293 aaattatgtttgcaactatccgtttttt--atcattaggtgaattttttggtcgaatttagtctagttataaacaatttacttttttaaaacaaataagt 41734196  T
Q  179 gggatgttcgaggttcaaaacctgattcctacatatattatatattatgcaatatccttaccaattaagttaagctcacaaaaac------gtgtgaact 272  Q
    ||| ||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||      |||||||||    
T  41734195 ggggtgtccgaggttcaaaacccgattcctatatatattatatattatgcaatatccctaccaattaagttaagctcacaaaaacaaaaacgtgtgaact 41734096  T
Q  273 acccatttaacgtggcaattgtgtatgtgctacgtacggcccaaatattattaggttaaatctaatttttgttccaataaaattctcaatttgttacgag 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41734095 acccatttaacgtggcaattgtgtatgtgctacgtacggcccaaatattattaggttaaatctaatttttgttccaataaaattctcaatttgttacgag 41733996  T
Q  373 ctcaaaatttaaatttcgttcttaattttttacctagatttagtcctttctaaagtctctaaaaccatccctcatattccaccattctttacactcacta 472  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  41733995 ctcaaaatttaaatttagttcttaattttttacctagatttagtcctttctaaagtctctaaaaccatccctcatattccaccatcctttacactcacca 41733896  T
Q  473 tcactcgagcatcacaccttcaaccaaccacaagtcactattgtgcatccttcaactaatttattttccccaacacca 550  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41733895 tcactcgagtatcacaccttcaaccaaccacaagtcactattgtgcatccttcaactaatttattttccccaacacca 41733818  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 41734993 - 41734937
Alignment:
Q  24 ggagatatatgacatcattgtctgcgacgaatttagggaggggcagacgtggatgaa 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41734993 ggagatatatgacatcattgtctgcgacgaatttagggaggggcagacgtggatgaa 41734937  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 3681669 - 3681628
Alignment:
Q  217 tatatattatgcaatatccttaccaattaagttaagctcaca 258  Q
    ||||||||||| | ||||||||||||||||| ||||||||||    
T  3681669 tatatattatgaattatccttaccaattaagataagctcaca 3681628  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 45261444 - 45261484
Alignment:
Q  217 tatatattatgcaatatccttaccaattaagttaagctcac 257  Q
    ||||||||||||||||||| |||||||| ||||| ||||||    
T  45261444 tatatattatgcaatatccctaccaattgagttatgctcac 45261484  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 28581228 - 28581186
Alignment:
Q  217 tatatattatgcaatatccttaccaattaagttaagctcacaa 259  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  28581228 tatataatatgcaatatccctaccaattaagttaagctcacaa 28581186  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 2263749 - 2263711
Alignment:
Q  219 tatattatgcaatatccttaccaattaagttaagctcac 257  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  2263749 tatattatgcaatgttcttaccaattaagttaagctcac 2263711  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 27651552 - 27651593
Alignment:
Q  218 atatattatgcaatatccttaccaattaagttaagctcacaa 259  Q
    |||||||||||| | |||||||||| ||||||||||||||||    
T  27651552 atatattatgcattgtccttaccaactaagttaagctcacaa 27651593  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 9408378 - 9408334
Alignment:
Q  218 atatattatgcaatatccttaccaattaagttaagctcacaaaaa 262  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||    
T  9408378 atatattatgcaatatctttaccaattaagttaaactcacgaaaa 9408334  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 11713706 - 11713666
Alignment:
Q  217 tatatattatgcaatatccttaccaattaagttaagctcac 257  Q
    ||||||||||||| |||||||||||||| | ||||||||||    
T  11713706 tatatattatgcattatccttaccaattgatttaagctcac 11713666  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 22062427 - 22062474
Alignment:
Q  210 catatattatatattatgcaatatccttaccaattaagttaagctcac 257  Q
    |||||||||||||||||| | | |||||||||||| ||||||||||||    
T  22062427 catatattatatattatgtattgtccttaccaattgagttaagctcac 22062474  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 22050279 - 22050244
Alignment:
Q  217 tatatattatgcaatatccttaccaattaagttaag 252  Q
    ||||||||||||||||||| ||||||||||||||||    
T  22050279 tatatattatgcaatatccctaccaattaagttaag 22050244  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 41897575 - 41897616
Alignment:
Q  218 atatattatgcaatatccttaccaattaagttaagctcacaa 259  Q
    |||||||||||||||||| |||||| |||||||| |||||||    
T  41897575 atatattatgcaatatccctaccaactaagttaatctcacaa 41897616  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 53807463 - 53807430
Alignment:
Q  218 atatattatgcaatatccttaccaattaagttaa 251  Q
    ||||||||||||||||||||| ||||||||||||    
T  53807463 atatattatgcaatatccttatcaattaagttaa 53807430  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 17872130 - 17872090
Alignment:
Q  217 tatatattatgcaatatccttaccaattaagttaagctcac 257  Q
    |||||| |||||||||||| ||||||||||| |||||||||    
T  17872130 tatatactatgcaatatccctaccaattaagctaagctcac 17872090  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 51772931 - 51772888
Alignment:
Q  218 atatattatgcaatatccttaccaattaagttaagctcacaaaa 261  Q
    ||||| |||||||||||| |||||| ||||||||||||||||||    
T  51772931 atataatatgcaatatccctaccaactaagttaagctcacaaaa 51772888  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 552213 - 552172
Alignment:
Q  218 atatattatgcaatatccttaccaattaagttaagctcacaa 259  Q
    |||||||||||||||||| |||||| | ||||||||||||||    
T  552213 atatattatgcaatatccctaccaactgagttaagctcacaa 552172  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 7772482 - 7772519
Alignment:
Q  218 atatattatgcaatatccttaccaattaagttaagctc 255  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  7772482 atatattatgcattatccttaccaattgagttaagctc 7772519  T

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Target: scaffold0999 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0999
Description:

Target: scaffold0999; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 2218 - 2178
Alignment:
Q  217 tatatattatgcaatatccttaccaattaagttaagctcac 257  Q
    ||||||||||| ||||||| ||||||||||||||| |||||    
T  2218 tatatattatgtaatatccctaccaattaagttaaactcac 2178  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 43843930 - 43843890
Alignment:
Q  218 atatattatgcaatatccttaccaattaagttaagctcaca 258  Q
    |||||||||||| | |||||||||| |||||||||||||||    
T  43843930 atatattatgcattgtccttaccaactaagttaagctcaca 43843890  T

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