View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_1D_low_11 (Length: 307)
Name: NF7461_1D_low_11
Description: NF7461_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_1D_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 22 - 305
Target Start/End: Complemental strand, 49271719 - 49271437
Alignment:
| Q |
22 |
atatatagctttaagttctgtccctctgttcctggtgttctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctgttggtg |
121 |
Q |
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| T |
49271719 |
atatatagctttaagttctgtccctctgttcctggtgttctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctgttggtg |
49271620 |
T |
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| Q |
122 |
atggtattgaagaaccttactatgttagatttcagaaggcttccacttttgctcagagcaataatcaagatttgagcagtgtgtaactgtaannnnnnnn |
221 |
Q |
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| T |
49271619 |
atggtattgaagaaccttactatgttagatttcagaaggcttccacttttgctcagagcaataatcaagatttgagcagtgtgtaactgt-agttttttt |
49271521 |
T |
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| Q |
222 |
agaaattgtgtgcttagtagtgaagtgtgatgggtcataataaggattgcggatccataataagccacaaaattgcacacaaac |
305 |
Q |
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| T |
49271520 |
agaaattgtgtgcttagtagtgaagtgtgatgggtcataataaggattgcggatccataataagccacaaaattgcacacaaac |
49271437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 49277633 - 49277455
Alignment:
| Q |
25 |
tatagctttaagttctgtccctctgttcctggtgttctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctgttggtgatg |
124 |
Q |
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| T |
49277633 |
tatagctttctgtactgtccttctgttcctggtactctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctcttggtgctg |
49277534 |
T |
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| Q |
125 |
gtattgaagaaccttactatgttagatttcagaaggcttccacttttgctcagagcaataatcaagatttgagcagtgt |
203 |
Q |
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| T |
49277533 |
gtattgaagaaccttattatgttagatttcagaaggcttccacttttactcagaacaagaatcaagatttcagcggtgt |
49277455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 49269273 - 49269119
Alignment:
| Q |
20 |
caatatatagctttaagttctgtccctctgttcctggtgttctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctgttgg |
119 |
Q |
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|||| |||| ||||||||||||||| ||||||||||||| | | |||||||||||| ||||||| |||||| |||||||||||||||||||||||||| |
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| T |
49269273 |
caatctatatctttaagttctgtccttctgttcctggtgctttatgtgctcctgttcgaactttcacagataccgatggaactaaagttatggctgttgg |
49269174 |
T |
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| Q |
120 |
tgatggtattga---agaaccttactatgttagatttcagaaggcttccactttt |
171 |
Q |
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| T |
49269173 |
tgatggtaatgatcttgaaccttattatgttaggtttcagagggtttccactttt |
49269119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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