View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_1D_low_12 (Length: 306)
Name: NF7461_1D_low_12
Description: NF7461_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_1D_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 34353171 - 34353436
Alignment:
| Q |
19 |
catcattgctagtttgggattcgacagagacaatggaagacgaaaagatcctggtggagctgaaagagtggttgatacggcaggcacgaaaagcacaaga |
118 |
Q |
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| T |
34353171 |
catcgttgctagtttgggattcgacagagacaatggaagacgaaaagatcctggtggagctgaaagagtggctgatacggcaggcacgaaaagcacaaga |
34353270 |
T |
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| Q |
119 |
caaagacttgactaaggaggaagaaaccattgttgcttgttgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaataca |
218 |
Q |
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| T |
34353271 |
caaagacttcactaaggaggaagaaaccattgtcgcttgttgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaataca |
34353370 |
T |
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| Q |
219 |
caagatcgtggttgattgtgtttgtttattttaatattacaccatgattgaaatatagtaaaagat |
284 |
Q |
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| T |
34353371 |
caagatcgtggttgattgtgtttgtttattttaatattacaccatgattgaaatatagtaaaagat |
34353436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 34358795 - 34359061
Alignment:
| Q |
18 |
acatcattgctagtttgggattcgacagagacaatggaagacgaaaagatcctggtggagctgaaagagtggttgatacggcaggcacgaaaagcacaag |
117 |
Q |
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| T |
34358795 |
acatcgttgctagtttgggattcgacataaacagtggaagacgaaaagatcctggtggagctgaaacagtggctgatacggccagcacgcaaagcacaag |
34358894 |
T |
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| Q |
118 |
acaaagacttgactaaggaggaagaaaccattgttgcttgttgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaatac |
217 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | |
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| T |
34358895 |
tcaaagacttgactaaggaggaagaagccattgttgtttgttgagaattctcagatcacataacattgttaaaagaagataaggtacacgcacgaaatgc |
34358994 |
T |
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| Q |
218 |
acaagatcgtggttgattgtgtttgtttattttaatattacaccatgattgaaatatagtaaaagat |
284 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||| | || |||||||||| |
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| T |
34358995 |
acaagatcatggttgattgtgtttgtttattttaatattactccatgattgcagtacagtaaaagat |
34359061 |
T |
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