View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_1D_low_16 (Length: 255)
Name: NF7461_1D_low_16
Description: NF7461_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_1D_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 2747306 - 2747075
Alignment:
| Q |
18 |
acatcacaaactacttcacccaaaccaaactaacaaca---caaaaacacactttctctcttttgcaacttcacttcttcatatctctgaaacatccttc |
114 |
Q |
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| T |
2747306 |
acatcacaaactacttcacccaaaccaaaccaacaacaacacaaaaacacactttctctcttttgcaacttca--------tatctctcaaacatccttc |
2747215 |
T |
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| Q |
115 |
aattcaacactataatagctacctagtaccttgttctctaacacacagaca----cacttgttttgtttcttttgttaagttttatggcttaccaaaacc |
210 |
Q |
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| T |
2747214 |
aa-----cactataatagctacctagtaccctgttctctaacacacaaacatacacacttgttttgtttcttttgttaagttttatggcttaccaaaacc |
2747120 |
T |
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| Q |
211 |
aacatctttcacaagagttaccaatccaacatttcacagaccaaa |
255 |
Q |
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| T |
2747119 |
aacatctttcacaagagttaccaatccaacatttcacagaccaaa |
2747075 |
T |
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