View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7461_1D_low_19 (Length: 242)

Name: NF7461_1D_low_19
Description: NF7461_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7461_1D_low_19
NF7461_1D_low_19
[»] chr8 (1 HSPs)
chr8 (157-226)||(39713545-39713614)
[»] chr2 (2 HSPs)
chr2 (121-161)||(40658481-40658521)
chr2 (124-152)||(31639714-31639742)
[»] chr1 (1 HSPs)
chr1 (15-47)||(36232073-36232105)
[»] chr7 (1 HSPs)
chr7 (121-152)||(19475121-19475152)
[»] chr4 (1 HSPs)
chr4 (121-152)||(8714042-8714073)
[»] chr5 (1 HSPs)
chr5 (121-155)||(3123615-3123649)
[»] chr6 (1 HSPs)
chr6 (121-161)||(33104950-33104990)


Alignment Details
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 39713545 - 39713614
Alignment:
Q  157 aattcgctttctaaaagaaataatccaaaattcgctctaacttatttatatagggtgaggagggtgatga 226  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  39713545 aatttgctctctaaaagaaataatccaaaattcgctctaacttatttatatacggtgatgagggttatga 39713614  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 40658521 - 40658481
Alignment:
Q  121 gggtgtaaccagaaatatatggggtgtgaataaaacaattc 161  Q
    |||||||||||||||||||||||||||||||| || |||||    
T  40658521 gggtgtaaccagaaatatatggggtgtgaatagaaaaattc 40658481  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 152
Target Start/End: Complemental strand, 31639742 - 31639714
Alignment:
Q  124 tgtaaccagaaatatatggggtgtgaata 152  Q
    |||||||||||||||||||||||||||||    
T  31639742 tgtaaccagaaatatatggggtgtgaata 31639714  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 36232073 - 36232105
Alignment:
Q  15 aatagcttattaaaaacatacaaattacaatga 47  Q
    |||||||||||||||||||||||||||||||||    
T  36232073 aatagcttattaaaaacatacaaattacaatga 36232105  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 152
Target Start/End: Original strand, 19475121 - 19475152
Alignment:
Q  121 gggtgtaaccagaaatatatggggtgtgaata 152  Q
    ||||||||||||||||||||||||||||||||    
T  19475121 gggtgtaaccagaaatatatggggtgtgaata 19475152  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 152
Target Start/End: Original strand, 8714042 - 8714073
Alignment:
Q  121 gggtgtaaccagaaatatatggggtgtgaata 152  Q
    ||||||||||||||||||||||||||||||||    
T  8714042 gggtgtaaccagaaatatatggggtgtgaata 8714073  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 3123615 - 3123649
Alignment:
Q  121 gggtgtaaccagaaatatatggggtgtgaataaaa 155  Q
    |||||||| ||||||||||||||||||||||||||    
T  3123615 gggtgtaatcagaaatatatggggtgtgaataaaa 3123649  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 33104990 - 33104950
Alignment:
Q  121 gggtgtaaccagaaatatatggggtgtgaataaaacaattc 161  Q
    ||||||||||| |||||||||||||||||||| || |||||    
T  33104990 gggtgtaaccaaaaatatatggggtgtgaatagaaaaattc 33104950  T

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