View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_1D_low_20 (Length: 234)
Name: NF7461_1D_low_20
Description: NF7461_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_1D_low_20 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 94 - 234
Target Start/End: Original strand, 36949738 - 36949878
Alignment:
| Q |
94 |
gaagtttacgaattacaagactataaatgcatgcacgtatgctacctggagaaaataacacaccattttgacgataatgttaatcattactaacattgtt |
193 |
Q |
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| T |
36949738 |
gaagtttacgaattacaagactataaaagcatgcacgtatgctacctggagaaaataacacaccattttgacgataatgttaattattactaacattgtt |
36949837 |
T |
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| Q |
194 |
gacctatatatataacacacttaagaatccttttcaagcaa |
234 |
Q |
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| T |
36949838 |
gacctatatatataacacacttaagaatccttttcaagcaa |
36949878 |
T |
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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 36950063 - 36949995
Alignment:
| Q |
22 |
gcacgatgagcagcagccatttataaatgggttcactgacacagtgaacactatttcggtggcagaacc |
90 |
Q |
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| T |
36950063 |
gcacgatgagcagcagccatttataaacgggttcactgacacagtgaacactatttcggtggcagaacc |
36949995 |
T |
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