View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_1D_low_23 (Length: 229)
Name: NF7461_1D_low_23
Description: NF7461_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_1D_low_23 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 3056742 - 3056952
Alignment:
| Q |
19 |
acatcaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggtggatgt |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3056742 |
acatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggtggatgt |
3056841 |
T |
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| Q |
119 |
gtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagcaattttaactgattgg |
218 |
Q |
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| T |
3056842 |
gtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagcaattttaactgattgg |
3056941 |
T |
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| Q |
219 |
gcttatgattg |
229 |
Q |
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||||||||||| |
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| T |
3056942 |
gcttatgattg |
3056952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 3035874 - 3036084
Alignment:
| Q |
19 |
acatcaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggtggatgt |
118 |
Q |
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|||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3035874 |
acatgaatcaaagcaaaaccaacaccggcataagaggaataaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggtggatgt |
3035973 |
T |
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| Q |
119 |
gtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagcaattttaactgattgg |
218 |
Q |
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| T |
3035974 |
gtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagcaattttaactgattgg |
3036073 |
T |
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| Q |
219 |
gcttatgattg |
229 |
Q |
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||||||||||| |
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| T |
3036074 |
gcttatgattg |
3036084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 3070170 - 3069960
Alignment:
| Q |
19 |
acatcaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggtggatgt |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3070170 |
acatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggttgatgt |
3070071 |
T |
|
| Q |
119 |
gtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagcaattttaactgattgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
3070070 |
gtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagctatcttaactgattgg |
3069971 |
T |
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| Q |
219 |
gcttatgattg |
229 |
Q |
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||||||||||| |
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| T |
3069970 |
gcttatgattg |
3069960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 3049081 - 3049002
Alignment:
| Q |
147 |
ataatttcatgtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagcaattttaactgattgggcttatga |
226 |
Q |
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| T |
3049081 |
ataatttcatgtagaagatgtgttgaagaaatggatcaagaaaatgaatacaaagctatcttaactgaatgggcttatga |
3049002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 21457666 - 21457736
Alignment:
| Q |
34 |
aaaccaacactggcataagaggaacaaaagggtatgttgcacttgaatgg-tttaaaaacatgcctatcac |
103 |
Q |
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|||||||||||| |||||| |||| |||| ||||| || ||||||||||| ||||||||||||| |||||| |
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| T |
21457666 |
aaaccaacactgccataaggggaagaaaatggtatctttcacttgaatggttttaaaaacatgcatatcac |
21457736 |
T |
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